RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 DGKHQ86XP1 1220 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 FOXP4Q8IVH2 680 aaPredicted RBP13.14□□□□□ -0.31
LINC00539-201ENST00000411525 CDAN1Q8IWY9 1227 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 CNKSR2Q8WXI2 1034 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 ANKS1AQ92625 1134 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 WRNIP1Q96S55 665 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 IL17RBQ9NRM6 502 aa13.14□□□□□ -0.31
LINC00539-201ENST00000411525 POTEFA5A3E0 1075 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 CPLX1O14810 134 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 TLR2O60603 784 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 CDKL5O76039 1030 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 CALM1P0DP23 149 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 CALM2P0DP24 149 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 CALM3P0DP25 149 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 AKR1B1P15121 316 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 PPATQ06203 517 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 PPIL2Q13356 520 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 SLC9C1Q4G0N8 1177 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 CPLX2Q6PUV4 134 aaKnown RBP13.13□□□□□ -0.31
LINC00539-201ENST00000411525 CCDC144CPQ8IYA2 1237 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 FAM43AQ8N2R8 423 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 NUP133Q8WUM0 1156 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 CCDC17Q96LX7 622 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 ZNF341Q9BYN7 854 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 KAT14Q9H8E8 782 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 HERC5Q9UII4 1024 aaKnown RBP13.13□□□□□ -0.31
LINC00539-201ENST00000411525 KIF3AQ9Y496 699 aa13.13□□□□□ -0.31
LINC00539-201ENST00000411525 BRCA2P51587 3418 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 IGKV6D-41A0A0C4DH26 115 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 FAM196BA6NMK8 535 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 IRF6O14896 467 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 DTNBO60941 627 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 BRD1O95696 1058 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 PDCP20941 246 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 CDC27P30260 824 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 PRMT2P55345 433 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 PKP1Q13835 747 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 TATDN1Q6P1N9 297 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 FAM184AQ8NB25 1140 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 CEP95Q96GE4 821 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 ZNF333Q96JL9 665 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.12□□□□□ -0.31
LINC00539-201ENST00000411525 STX8Q9UNK0 236 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 SNCAIPQ9Y6H5 919 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 CEP290O15078 2479 aa13.12□□□□□ -0.31
LINC00539-201ENST00000411525 CCDC196A0A1B0GTZ2 297 aa13.11□□□□□ -0.31
LINC00539-201ENST00000411525 STX6O43752 255 aa13.11□□□□□ -0.31
LINC00539-201ENST00000411525 SLURP2P0DP57 97 aa13.11□□□□□ -0.31
LINC00539-201ENST00000411525 PDIA4P13667 645 aaKnown RBP13.11□□□□□ -0.31
LINC00539-201ENST00000411525 SYT1P21579 422 aa13.11□□□□□ -0.31
LINC00539-201ENST00000411525 NOVP48745 357 aa13.11□□□□□ -0.31
LINC00539-201ENST00000411525 TROAPQ12815 778 aa13.11□□□□□ -0.31
LINC00539-201ENST00000411525 PPP2R5BQ15173 497 aa13.11□□□□□ -0.31
LINC00539-201ENST00000411525 CERKLQ49MI3 558 aaPredicted RBP13.11□□□□□ -0.31
LINC00539-201ENST00000411525 PPP4R3BQ5MIZ7 849 aa13.11□□□□□ -0.31
LINC00539-201ENST00000411525 ZKSCAN4Q969J2 545 aaPredicted RBP13.11□□□□□ -0.31
LINC00539-201ENST00000411525 DDX11Q96FC9 970 aa13.11□□□□□ -0.31
LINC00539-201ENST00000411525 FAM217BQ9NTX9 383 aaPredicted RBP13.11□□□□□ -0.31
LINC00539-201ENST00000411525 RBM28Q9NW13 759 aaKnown RBP13.11□□□□□ -0.31
LINC00539-201ENST00000411525 STK36Q9NRP7 1315 aa13.11□□□□□ -0.31
LINC00539-201ENST00000411525 MYH4Q9Y623 1939 aa13.1□□□□□ -0.31
LINC00539-201ENST00000411525 BTBD19C9JJ37 291 aa13.1□□□□□ -0.31
LINC00539-201ENST00000411525 MPHOSPH10O00566 681 aaKnown RBP13.1□□□□□ -0.31
LINC00539-201ENST00000411525 TOP1P11387 765 aaKnown RBP13.1□□□□□ -0.31
LINC00539-201ENST00000411525 EN2P19622 333 aaPredicted RBP13.1□□□□□ -0.31
LINC00539-201ENST00000411525 ADD1P35611 737 aaKnown RBP13.1□□□□□ -0.31
LINC00539-201ENST00000411525 LACTBP83111 547 aaPredicted RBP13.1□□□□□ -0.31
LINC00539-201ENST00000411525 NTRK3Q16288 839 aa13.1□□□□□ -0.31
LINC00539-201ENST00000411525 LARP1BQ659C4 914 aaKnown RBP13.1□□□□□ -0.31
LINC00539-201ENST00000411525 FANCBQ8NB91 859 aa13.1□□□□□ -0.31
LINC00539-201ENST00000411525 PNMA1Q8ND90 353 aa13.1□□□□□ -0.31
LINC00539-201ENST00000411525 CTCFLQ8NI51 663 aaPredicted RBP13.1□□□□□ -0.31
LINC00539-201ENST00000411525 TNPO1Q92973 898 aaKnown RBP13.1□□□□□ -0.31
LINC00539-201ENST00000411525 TMEM47Q9BQJ4 181 aa13.1□□□□□ -0.31
LINC00539-201ENST00000411525 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.1□□□□□ -0.31
LINC00539-201ENST00000411525 MTMR4Q9NYA4 1195 aa13.1□□□□□ -0.31
LINC00539-201ENST00000411525 ZDHHC9Q9Y397 364 aa13.1□□□□□ -0.31
LINC00539-201ENST00000411525 PTCH2Q9Y6C5 1203 aa13.1□□□□□ -0.31
LINC00539-201ENST00000411525 ATAD5Q96QE3 1844 aa13.09□□□□□ -0.31
LINC00539-201ENST00000411525 TBC1D12O60347 775 aa13.09□□□□□ -0.31
LINC00539-201ENST00000411525 IFNAR1P17181 557 aa13.09□□□□□ -0.31
LINC00539-201ENST00000411525 HOXD10P28358 340 aa13.09□□□□□ -0.31
LINC00539-201ENST00000411525 KIF5BP33176 963 aa13.09□□□□□ -0.31
LINC00539-201ENST00000411525 ABCB5Q2M3G0 1257 aa13.09□□□□□ -0.31
LINC00539-201ENST00000411525 TMEM179Q6ZVK1 233 aa13.09□□□□□ -0.31
LINC00539-201ENST00000411525 MIGA2Q7L4E1 593 aa13.09□□□□□ -0.31
LINC00539-201ENST00000411525 ANKRD23Q86SG2 305 aa13.09□□□□□ -0.31
LINC00539-201ENST00000411525 MAP3K14Q99558 947 aa13.09□□□□□ -0.31
LINC00539-201ENST00000411525 ORC3Q9UBD5 711 aaPredicted RBP13.09□□□□□ -0.31
LINC00539-201ENST00000411525 VPS37CA5D8V6 355 aaPredicted RBP13.08□□□□□ -0.32
LINC00539-201ENST00000411525 PPFIA3O75145 1194 aa13.08□□□□□ -0.32
LINC00539-201ENST00000411525 GDF11O95390 407 aa13.08□□□□□ -0.32
LINC00539-201ENST00000411525 FMNL1O95466 1100 aaPredicted RBP13.08□□□□□ -0.32
LINC00539-201ENST00000411525 TTLL1O95922 423 aa13.08□□□□□ -0.32
LINC00539-201ENST00000411525 ZSCAN22P10073 491 aaPredicted RBP13.08□□□□□ -0.32
LINC00539-201ENST00000411525 FDPSP14324 419 aaKnown RBP13.08□□□□□ -0.32
LINC00539-201ENST00000411525 CAP1Q01518 475 aa13.08□□□□□ -0.32
LINC00539-201ENST00000411525 SSRP1Q08945 709 aaKnown RBP13.08□□□□□ -0.32
LINC00539-201ENST00000411525 GRM4Q14833 912 aa13.08□□□□□ -0.32
LINC00539-201ENST00000411525 TMTC3Q6ZXV5 915 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms