RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 GSE1Q14687 1217 aa16.22■□□□□ 0.19
GPNMB-203ENST00000409458 NPY5RQ15761 445 aa16.22■□□□□ 0.19
GPNMB-203ENST00000409458 NOSTRINQ8IVI9 506 aa16.22■□□□□ 0.19
GPNMB-203ENST00000409458 GPKOWQ92917 476 aaPredicted RBP eCLIP16.22■□□□□ 0.19
GPNMB-203ENST00000409458 MKL1Q969V6 931 aa16.22■□□□□ 0.19
GPNMB-203ENST00000409458 UBA5Q9GZZ9 404 aa16.22■□□□□ 0.19
GPNMB-203ENST00000409458 FOXP1Q9H334 677 aaPredicted RBP16.22■□□□□ 0.19
GPNMB-203ENST00000409458 CABP5Q9NP86 173 aa16.22■□□□□ 0.19
GPNMB-203ENST00000409458 RTEL1Q9NZ71 1219 aa16.22■□□□□ 0.19
GPNMB-203ENST00000409458 CLIC4Q9Y696 253 aa16.22■□□□□ 0.19
GPNMB-203ENST00000409458 SRCAPQ6ZRS2 3230 aa16.21■□□□□ 0.19
GPNMB-203ENST00000409458 ZNF543Q08ER8 600 aa16.21■□□□□ 0.19
GPNMB-203ENST00000409458 WWC2Q6AWC2 1192 aa16.21■□□□□ 0.19
GPNMB-203ENST00000409458 GPCPD1Q9NPB8 672 aa16.21■□□□□ 0.19
GPNMB-203ENST00000409458 TMEM63CQ9P1W3 806 aa16.21■□□□□ 0.19
GPNMB-203ENST00000409458 RCOR1Q9UKL0 485 aa16.21■□□□□ 0.19
GPNMB-203ENST00000409458 ZBTB21Q9ULJ3 1066 aa16.21■□□□□ 0.19
GPNMB-203ENST00000409458 DDNO94850 711 aaPredicted RBP16.21■□□□□ 0.18
GPNMB-203ENST00000409458 SMARCA1P28370 1054 aa16.21■□□□□ 0.18
GPNMB-203ENST00000409458 KRT2P35908 639 aa16.21■□□□□ 0.18
GPNMB-203ENST00000409458 EPS15P42566 896 aa16.21■□□□□ 0.18
GPNMB-203ENST00000409458 MAP3K10Q02779 954 aa16.21■□□□□ 0.18
GPNMB-203ENST00000409458 CCDC96Q2M329 555 aa16.21■□□□□ 0.18
GPNMB-203ENST00000409458 C9orf131Q5VYM1 1079 aa16.21■□□□□ 0.18
GPNMB-203ENST00000409458 TYW1BQ6NUM6 668 aa16.21■□□□□ 0.18
GPNMB-203ENST00000409458 PGBD1Q96JS3 809 aa16.21■□□□□ 0.18
GPNMB-203ENST00000409458 POLR3EQ9NVU0 708 aa16.21■□□□□ 0.18
GPNMB-203ENST00000409458 NASPP49321 788 aaPredicted RBP16.2■□□□□ 0.18
GPNMB-203ENST00000409458 ANGEL2Q5VTE6 544 aaKnown RBP16.2■□□□□ 0.18
GPNMB-203ENST00000409458 RIOX1Q9H6W3 641 aa16.2■□□□□ 0.18
GPNMB-203ENST00000409458 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.2■□□□□ 0.18
GPNMB-203ENST00000409458 A0A1W2PRG0 241 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 STXBP3O00186 592 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 HIRAP54198 1017 aaPredicted RBP16.19■□□□□ 0.18
GPNMB-203ENST00000409458 GPATCH4Q5T3I0 446 aaKnown RBP16.19■□□□□ 0.18
GPNMB-203ENST00000409458 ANO1Q5XXA6 986 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 SLFN13Q68D06 897 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 TTBK2Q6IQ55 1244 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 KCTD1Q719H9 257 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 HEATR3Q7Z4Q2 680 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 HOMER1Q86YM7 354 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 LINC00301Q8NCQ3 95 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 GMCL1P1Q8NEA9 526 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 DCAF4Q8WV16 495 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 TNFRSF25Q93038 417 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 RRP36Q96EU6 259 aaKnown RBP16.19■□□□□ 0.18
GPNMB-203ENST00000409458 PIGSQ96S52 555 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 DEFB129Q9H1M3 183 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 VAT1LQ9HCJ6 419 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 SH3GLB2Q9NR46 395 aa16.19■□□□□ 0.18
GPNMB-203ENST00000409458 FAM205CA6NFA0 338 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 ADAMTS3O15072 1205 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 RAD21O60216 631 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 YEATS4O95619 227 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 CAP2P40123 477 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 NLRP5P59047 1200 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 ZSCAN23Q3MJ62 389 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 EARS2Q5JPH6 523 aaKnown RBP16.18■□□□□ 0.18
GPNMB-203ENST00000409458 APOBEC3FQ8IUX4 373 aaKnown RBP16.18■□□□□ 0.18
GPNMB-203ENST00000409458 BRMS1Q9HCU9 246 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 BARHL2Q9NY43 387 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 GGA3Q9NZ52 723 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 PHF20L1A8MW92 1017 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 F5H6K3 240 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 NDUFB10O96000 172 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 ECE1P42892 770 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 SLC1A4P43007 532 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 TOB1P50616 345 aaPredicted RBP16.18■□□□□ 0.18
GPNMB-203ENST00000409458 KLRC3Q07444 240 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 STK38Q15208 465 aa16.18■□□□□ 0.18
GPNMB-203ENST00000409458 SF3A1Q15459 793 aaKnown RBP16.18■□□□□ 0.18
GPNMB-203ENST00000409458 SEC63Q9UGP8 760 aaKnown RBP16.18■□□□□ 0.18
GPNMB-203ENST00000409458 SLC16A2P36021 539 aa16.17■□□□□ 0.18
GPNMB-203ENST00000409458 NOM1Q5C9Z4 860 aaKnown RBP16.17■□□□□ 0.18
GPNMB-203ENST00000409458 ADGRF4Q8IZF3 695 aa16.17■□□□□ 0.18
GPNMB-203ENST00000409458 CCDC148Q8NFR7 591 aa16.17■□□□□ 0.18
GPNMB-203ENST00000409458 ACER1Q8TDN7 264 aa16.17■□□□□ 0.18
GPNMB-203ENST00000409458 ARHGEF10LQ9HCE6 1279 aa16.17■□□□□ 0.18
GPNMB-203ENST00000409458 ISY1Q9ULR0 285 aaKnown RBP16.17■□□□□ 0.18
GPNMB-203ENST00000409458 SYNPO2Q9UMS6 1093 aa16.17■□□□□ 0.18
GPNMB-203ENST00000409458 GOLGA6L4A6NEF3 574 aa16.16■□□□□ 0.18
GPNMB-203ENST00000409458 SPTLC2O15270 562 aa16.16■□□□□ 0.18
GPNMB-203ENST00000409458 LIG1P18858 919 aa16.16■□□□□ 0.18
GPNMB-203ENST00000409458 ME1P48163 572 aa16.16■□□□□ 0.18
GPNMB-203ENST00000409458 PTPAQ15257 358 aa16.16■□□□□ 0.18
GPNMB-203ENST00000409458 NBPF12Q5TAG4 269 aaPredicted RBP16.16■□□□□ 0.18
GPNMB-203ENST00000409458 BICD2Q8TD16 824 aa16.16■□□□□ 0.18
GPNMB-203ENST00000409458 KCNG4Q8TDN1 519 aa16.16■□□□□ 0.18
GPNMB-203ENST00000409458 GMCL1Q96IK5 515 aa16.16■□□□□ 0.18
GPNMB-203ENST00000409458 NUP88Q99567 741 aaPredicted RBP16.16■□□□□ 0.18
GPNMB-203ENST00000409458 JMJD4Q9H9V9 463 aa16.16■□□□□ 0.18
GPNMB-203ENST00000409458 PCDHA4Q9UN74 947 aa16.16■□□□□ 0.18
GPNMB-203ENST00000409458 DOCK1Q14185 1865 aa16.16■□□□□ 0.18
GPNMB-203ENST00000409458 CALML3P27482 149 aa16.15■□□□□ 0.18
GPNMB-203ENST00000409458 LMOD1P29536 600 aaPredicted RBP16.15■□□□□ 0.18
GPNMB-203ENST00000409458 RILPL1Q5EBL4 403 aa16.15■□□□□ 0.18
GPNMB-203ENST00000409458 CCDC84Q86UT8 332 aaPredicted RBP16.15■□□□□ 0.18
GPNMB-203ENST00000409458 BLIDQ8IZY5 108 aa16.15■□□□□ 0.18
GPNMB-203ENST00000409458 DAGLBQ8NCG7 672 aa16.15■□□□□ 0.18
GPNMB-203ENST00000409458 SYAP1Q96A49 352 aaPredicted RBP16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms