RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 GANCQ8TET4 914 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 APOL6Q9BWW8 343 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 KDRP35968 1356 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 ZAP70P43403 619 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 HMGCS2P54868 508 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 NLRP7Q8WX94 980 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 ZKSCAN3Q9BRR0 538 aa8.17□□□□□ -1.1
SCN9A-202ENST00000409435 LUC7L2Q9Y383 392 aaKnown RBP8.17□□□□□ -1.1
SCN9A-202ENST00000409435 ZC3H13Q5T200 1668 aaKnown RBP8.17□□□□□ -1.1
SCN9A-202ENST00000409435 FAM117BQ6P1L5 589 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 SESTD1Q86VW0 696 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 C10orf67Q8IYJ2 551 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 FAM177A1Q8N128 213 aaPredicted RBP8.16□□□□□ -1.1
SCN9A-202ENST00000409435 APPBP2Q92624 585 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 TAF4BQ92750 862 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 HELLSQ9NRZ9 838 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 CPA4Q9UI42 421 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 BCORL1Q5H9F3 1711 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 TTLL1O95922 423 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 KIF23Q02241 960 aaPredicted RBP8.16□□□□□ -1.1
SCN9A-202ENST00000409435 MLLT1Q03111 559 aaPredicted RBP8.16□□□□□ -1.1
SCN9A-202ENST00000409435 NUDT18Q6ZVK8 323 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 KLHDC4Q8TBB5 520 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 NMRK2Q9NPI5 230 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 FBXL21Q9UKT6 434 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 CEP152O94986 1710 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 USP17L12C9JPN9 530 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 USP17L21D6R901 530 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 CHL1O00533 1208 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 PRPF40AO75400 957 aaKnown RBP8.16□□□□□ -1.1
SCN9A-202ENST00000409435 ITPK1Q13572 414 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 NONOQ15233 471 aaKnown RBP eCLIP8.16□□□□□ -1.1
SCN9A-202ENST00000409435 SH2D4BQ5SQS7 431 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 TMEM179Q6ZVK1 233 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 RPUSD2Q8IZ73 545 aaKnown RBP8.16□□□□□ -1.1
SCN9A-202ENST00000409435 SECISBP2LQ93073 1101 aaKnown RBP8.16□□□□□ -1.1
SCN9A-202ENST00000409435 PRIMPOLQ96LW4 560 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 CCDC113Q9H0I3 377 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 MMRN2Q9H8L6 949 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 ZNF70Q9UC06 446 aaPredicted RBP8.16□□□□□ -1.1
SCN9A-202ENST00000409435 RSPH14Q9UHP6 348 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 PIK3C2BO00750 1634 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 NCAPD2Q15021 1401 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 FRMPD2Q68DX3 1309 aaPredicted RBP8.16□□□□□ -1.1
SCN9A-202ENST00000409435 RGL2O15211 777 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 TACC1O75410 805 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 UPP2O95045 317 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 MAPK4P31152 587 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 IFFO1Q0D2I5 559 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 SNRNP48Q6IEG0 339 aaKnown RBP8.16□□□□□ -1.1
SCN9A-202ENST00000409435 OR6J1Q8NGC5 347 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 PHLPP1O60346 1717 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 ZSCAN12O43309 604 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 ZNF280CQ8ND82 737 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 PALD1Q9ULE6 856 aa8.16□□□□□ -1.1
SCN9A-202ENST00000409435 CD163L1Q9NR16 1453 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 ABCC4O15439 1325 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 TYW5A2RUC4 315 aaKnown RBP8.15□□□□□ -1.1
SCN9A-202ENST00000409435 GH2P01242 217 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 PSMC4P43686 418 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 FKBP1BP68106 108 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 HAUS3Q68CZ6 603 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 PCSK9Q8NBP7 692 aaKnown RBP8.15□□□□□ -1.1
SCN9A-202ENST00000409435 PROCA1Q8NCQ7 364 aaPredicted RBP8.15□□□□□ -1.1
SCN9A-202ENST00000409435 OPTNQ96CV9 577 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 RABGAP1Q9Y3P9 1069 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 GAS7O60861 476 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 TOP1P11387 765 aaKnown RBP8.15□□□□□ -1.1
SCN9A-202ENST00000409435 FAM47AQ5JRC9 791 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 PLEKHH3Q7Z736 793 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 GIMAP8Q8ND71 665 aaPredicted RBP8.15□□□□□ -1.1
SCN9A-202ENST00000409435 DBNDD2Q9BQY9 259 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 MED10Q9BTT4 135 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 MINPP1Q9UNW1 487 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 BMP15O95972 392 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 C1QTNF8P60827 252 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 BFSP2Q13515 415 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 CELF1Q92879 486 aaKnown RBP8.15□□□□□ -1.1
SCN9A-202ENST00000409435 STARD7Q9NQZ5 370 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 SUGT1Q9Y2Z0 365 aa8.15□□□□□ -1.1
SCN9A-202ENST00000409435 CLNS1AP54105 237 aaKnown RBP8.15□□□□□ -1.11
SCN9A-202ENST00000409435 SNX16P57768 344 aa8.15□□□□□ -1.11
SCN9A-202ENST00000409435 DBN1Q16643 649 aa8.15□□□□□ -1.11
SCN9A-202ENST00000409435 CCDC40Q4G0X9 1142 aa8.15□□□□□ -1.11
SCN9A-202ENST00000409435 ARHGAP29Q52LW3 1261 aa8.15□□□□□ -1.11
SCN9A-202ENST00000409435 HS2ST1Q7LGA3 356 aa8.15□□□□□ -1.11
SCN9A-202ENST00000409435 FEM1BQ9UK73 627 aa8.15□□□□□ -1.11
SCN9A-202ENST00000409435 NPC1L1Q9UHC9 1359 aa8.15□□□□□ -1.11
SCN9A-202ENST00000409435 TTC41PQ6P2S7 1318 aa8.15□□□□□ -1.11
SCN9A-202ENST00000409435 PRPF6O94906 941 aaKnown RBP8.15□□□□□ -1.11
SCN9A-202ENST00000409435 HSPA6P17066 643 aa8.15□□□□□ -1.11
SCN9A-202ENST00000409435 KRT17Q04695 432 aa8.15□□□□□ -1.11
SCN9A-202ENST00000409435 FAM49AQ9H0Q0 323 aaPredicted RBP8.15□□□□□ -1.11
SCN9A-202ENST00000409435 ATP8A2Q9NTI2 1148 aa8.15□□□□□ -1.11
SCN9A-202ENST00000409435 HAUS2Q9NVX0 235 aa8.15□□□□□ -1.11
SCN9A-202ENST00000409435 STXBP2Q15833 593 aa8.14□□□□□ -1.11
SCN9A-202ENST00000409435 ZNF827Q17R98 1081 aa8.14□□□□□ -1.11
SCN9A-202ENST00000409435 NCAPH2Q6IBW4 605 aa8.14□□□□□ -1.11
SCN9A-202ENST00000409435 RNF207Q6ZRF8 634 aa8.14□□□□□ -1.11
SCN9A-202ENST00000409435 VPS36Q86VN1 386 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms