RNA–Protein interactions for RNA: ENST00000397397.6

TSPAN4-203, Transcript of tetraspanin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TSPAN4, Length 1,423 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN4-203ENST00000397397 FASTKD5Q7L8L6 764 aaKnown RBP27.55■■■□□ 2
TSPAN4-203ENST00000397397 CCDC144CPQ8IYA2 1237 aa27.55■■■□□ 2
TSPAN4-203ENST00000397397 PROCA1Q8NCQ7 364 aaPredicted RBP27.55■■■□□ 2
TSPAN4-203ENST00000397397 ZNF274Q96GC6 653 aaPredicted RBP27.55■■■□□ 2
TSPAN4-203ENST00000397397 MS4A4AQ96JQ5 239 aa27.55■■■□□ 2
TSPAN4-203ENST00000397397 NUP88Q99567 741 aaPredicted RBP27.55■■■□□ 2
TSPAN4-203ENST00000397397 CCL15-CCL14A0A0B4J2E2 113 aa27.54■■■□□ 2
TSPAN4-203ENST00000397397 GOLGA8AA7E2F4 631 aa27.54■■■□□ 2
TSPAN4-203ENST00000397397 WDR46O15213 610 aaKnown RBP27.54■■■□□ 2
TSPAN4-203ENST00000397397 SNHG28P0DPA3 235 aa27.54■■■□□ 2
TSPAN4-203ENST00000397397 BMP3P12645 472 aa27.54■■■□□ 2
TSPAN4-203ENST00000397397 VCAM1P19320 739 aa27.54■■■□□ 2
TSPAN4-203ENST00000397397 MCM2P49736 904 aa27.54■■■□□ 2
TSPAN4-203ENST00000397397 GRM4Q14833 912 aa27.54■■■□□ 2
TSPAN4-203ENST00000397397 CCL15Q16663 113 aa27.54■■■□□ 2
TSPAN4-203ENST00000397397 FAM83BQ5T0W9 1011 aa27.54■■■□□ 2
TSPAN4-203ENST00000397397 CTCFLQ8NI51 663 aaPredicted RBP27.54■■■□□ 2
TSPAN4-203ENST00000397397 FRMPD2Q68DX3 1309 aaPredicted RBP27.53■■■□□ 2
TSPAN4-203ENST00000397397 MANSC4A6NHS7 340 aaPredicted RBP27.53■■■□□ 2
TSPAN4-203ENST00000397397 PARP1P09874 1014 aaKnown RBP27.53■■■□□ 2
TSPAN4-203ENST00000397397 METAP2P50579 478 aaKnown RBP eCLIP27.53■■■□□ 2
TSPAN4-203ENST00000397397 RCAN1P53805 252 aa27.53■■■□□ 2
TSPAN4-203ENST00000397397 STK3Q13188 491 aa27.53■■■□□ 2
TSPAN4-203ENST00000397397 MOGSQ13724 837 aa27.53■■■□□ 2
TSPAN4-203ENST00000397397 MAP3K14Q99558 947 aa27.53■■■□□ 2
TSPAN4-203ENST00000397397 HPS5Q9UPZ3 1129 aa27.53■■■□□ 2
TSPAN4-203ENST00000397397 ZNF543Q08ER8 600 aa27.52■■■□□ 2
TSPAN4-203ENST00000397397 ASPRV1Q53RT3 343 aa27.52■■■□□ 2
TSPAN4-203ENST00000397397 KCTD1Q719H9 257 aa27.52■■■□□ 2
TSPAN4-203ENST00000397397 FANCBQ8NB91 859 aa27.52■■■□□ 2
TSPAN4-203ENST00000397397 ZSCAN31Q96LW9 406 aaPredicted RBP27.52■■■□□ 2
TSPAN4-203ENST00000397397 RPAP3Q9H6T3 665 aaPredicted RBP27.52■■■□□ 2
TSPAN4-203ENST00000397397 GPCPD1Q9NPB8 672 aa27.52■■■□□ 2
TSPAN4-203ENST00000397397 LARGE1O95461 756 aa27.51■■□□□ 1.99
TSPAN4-203ENST00000397397 GOLGA8HP0CJ92 632 aa27.51■■□□□ 1.99
TSPAN4-203ENST00000397397 KIF5BP33176 963 aa27.51■■□□□ 1.99
TSPAN4-203ENST00000397397 CCT2P78371 535 aaKnown RBP27.51■■□□□ 1.99
TSPAN4-203ENST00000397397 ME3Q16798 604 aa27.51■■□□□ 1.99
TSPAN4-203ENST00000397397 RTN1Q16799 776 aa27.51■■□□□ 1.99
TSPAN4-203ENST00000397397 TREML2Q5T2D2 321 aa27.51■■□□□ 1.99
TSPAN4-203ENST00000397397 BRI3BPQ8WY22 251 aa27.51■■□□□ 1.99
TSPAN4-203ENST00000397397 SLKQ9H2G2 1235 aaPredicted RBP27.51■■□□□ 1.99
TSPAN4-203ENST00000397397 TSHZ2Q9NRE2 1034 aa27.51■■□□□ 1.99
TSPAN4-203ENST00000397397 MAD2L2Q9UI95 211 aa27.51■■□□□ 1.99
TSPAN4-203ENST00000397397 GPATCH4Q5T3I0 446 aaKnown RBP27.5■■□□□ 1.99
TSPAN4-203ENST00000397397 ZIC5Q96T25 663 aa27.5■■□□□ 1.99
TSPAN4-203ENST00000397397 TANGO6Q9C0B7 1094 aa27.5■■□□□ 1.99
TSPAN4-203ENST00000397397 AGTPBP1Q9UPW5 1226 aa27.5■■□□□ 1.99
TSPAN4-203ENST00000397397 PALM3A6NDB9 673 aaPredicted RBP27.5■■□□□ 1.99
TSPAN4-203ENST00000397397 TMEM232C9JQI7 657 aa27.5■■□□□ 1.99
TSPAN4-203ENST00000397397 PFKFB2O60825 505 aa27.5■■□□□ 1.99
TSPAN4-203ENST00000397397 NOGQ13253 232 aa27.5■■□□□ 1.99
TSPAN4-203ENST00000397397 STAG2Q8N3U4 1231 aa27.5■■□□□ 1.99
TSPAN4-203ENST00000397397 SNX21Q969T3 373 aa27.5■■□□□ 1.99
TSPAN4-203ENST00000397397 WBP1LQ9NX94 342 aa27.5■■□□□ 1.99
TSPAN4-203ENST00000397397 NID2Q14112 1375 aa27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 TESPA1A2RU30 521 aaPredicted RBP27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 USP17L15C9J2P7 530 aa27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 USP17L13C9JLJ4 530 aa27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 USP17L11C9JVI0 530 aa27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 USP17L18D6R9N7 530 aa27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 USP17L22D6RA61 530 aa27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 USP17L17D6RBQ6 530 aa27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 USP17L19D6RCP7 530 aa27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 USP17L20D6RJB6 530 aa27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 KIF23Q02241 960 aaPredicted RBP27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 USP17L24Q0WX57 530 aa27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 TTBK2Q6IQ55 1244 aa27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 GPAT2Q6NUI2 795 aa27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 NCOA5Q9HCD5 579 aaKnown RBP27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 SH2B1Q9NRF2 756 aaPredicted RBP27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 RBM28Q9NW13 759 aaKnown RBP27.49■■□□□ 1.99
TSPAN4-203ENST00000397397 IKQ13123 557 aaPredicted RBP27.48■■□□□ 1.99
TSPAN4-203ENST00000397397 PPP2R5BQ15173 497 aa27.48■■□□□ 1.99
TSPAN4-203ENST00000397397 NECAB1Q8N987 351 aa27.48■■□□□ 1.99
TSPAN4-203ENST00000397397 CCDC196A0A1B0GTZ2 297 aa27.47■■□□□ 1.99
TSPAN4-203ENST00000397397 BTBD19C9JJ37 291 aa27.47■■□□□ 1.99
TSPAN4-203ENST00000397397 KLRF2D3W0D1 207 aa27.47■■□□□ 1.99
TSPAN4-203ENST00000397397 FOXN1O15353 648 aa27.47■■□□□ 1.99
TSPAN4-203ENST00000397397 CDC27P30260 824 aa27.47■■□□□ 1.99
TSPAN4-203ENST00000397397 GNAQP50148 359 aa27.47■■□□□ 1.99
TSPAN4-203ENST00000397397 INHBEP58166 350 aa27.47■■□□□ 1.99
TSPAN4-203ENST00000397397 SCRN1Q12765 414 aa27.47■■□□□ 1.99
TSPAN4-203ENST00000397397 SREBF2Q12772 1141 aa27.47■■□□□ 1.99
TSPAN4-203ENST00000397397 PABPC4Q13310 644 aaKnown RBP eCLIP27.47■■□□□ 1.993e-8■■■■■ 35.6
TSPAN4-203ENST00000397397 CATSPERGQ6ZRH7 1159 aa27.47■■□□□ 1.99
TSPAN4-203ENST00000397397 HSCBQ8IWL3 235 aa27.47■■□□□ 1.99
TSPAN4-203ENST00000397397 TMX3Q96JJ7 454 aa27.47■■□□□ 1.99
TSPAN4-203ENST00000397397 FAM217BQ9NTX9 383 aaPredicted RBP27.47■■□□□ 1.99
TSPAN4-203ENST00000397397 FEM1BQ9UK73 627 aa27.47■■□□□ 1.99
TSPAN4-203ENST00000397397 ADD1P35611 737 aaKnown RBP27.46■■□□□ 1.99
TSPAN4-203ENST00000397397 MAP2K2P36507 400 aa27.46■■□□□ 1.99
TSPAN4-203ENST00000397397 STAT2P52630 851 aa27.46■■□□□ 1.99
TSPAN4-203ENST00000397397 SAMD1Q6SPF0 538 aaPredicted RBP27.46■■□□□ 1.99
TSPAN4-203ENST00000397397 ANKRD23Q86SG2 305 aa27.46■■□□□ 1.99
TSPAN4-203ENST00000397397 CHURC1Q8WUH1 139 aa27.46■■□□□ 1.99
TSPAN4-203ENST00000397397 PTPN18Q99952 460 aa27.46■■□□□ 1.99
TSPAN4-203ENST00000397397 UBA5Q9GZZ9 404 aa27.46■■□□□ 1.99
TSPAN4-203ENST00000397397 FBXO28Q9NVF7 368 aa27.46■■□□□ 1.99
TSPAN4-203ENST00000397397 FLOT1O75955 427 aa27.45■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms