RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 APPP05067 770 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 ANKRD1Q15327 319 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 TKFCQ3LXA3 575 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 IQCA1Q86XH1 822 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 ZSCAN29Q8IWY8 852 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-202ENST00000394943 ZNF713Q8N859 430 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-202ENST00000394943 MAP3K20Q9NYL2 800 aaKnown RBP8.24□□□□□ -1.09
LIMA1-202ENST00000394943 SCAF8Q9UPN6 1271 aaKnown RBP8.24□□□□□ -1.09
LIMA1-202ENST00000394943 ZNF536O15090 1300 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 PFKFB2O60825 505 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 GDF11O95390 407 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 NDUFB10O96000 172 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 GCLCP48506 637 aaPredicted RBP8.24□□□□□ -1.09
LIMA1-202ENST00000394943 PABPC4Q13310 644 aaKnown RBP eCLIP8.24□□□□□ -1.09
LIMA1-202ENST00000394943 ABRAQ8N0Z2 381 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 RBM28Q9NW13 759 aaKnown RBP8.24□□□□□ -1.09
LIMA1-202ENST00000394943 PPP1R9AQ9ULJ8 1098 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 F5H6K3 240 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 GNRH1P01148 92 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 KLRC3Q07444 240 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 CUL4AQ13619 759 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 MORC4Q8TE76 937 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 CNKSR2Q8WXI2 1034 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 SLC38A10Q9HBR0 1119 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 ZHX2Q9Y6X8 837 aa8.24□□□□□ -1.09
LIMA1-202ENST00000394943 ZNFX1Q9P2E3 1918 aaKnown RBP8.24□□□□□ -1.09
LIMA1-202ENST00000394943 CAPN2P17655 700 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 MCM2P49736 904 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 ZNF157P51786 506 aaPredicted RBP8.23□□□□□ -1.09
LIMA1-202ENST00000394943 KIF23Q02241 960 aaPredicted RBP8.23□□□□□ -1.09
LIMA1-202ENST00000394943 APOA5Q6Q788 366 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 BRPF3Q9ULD4 1205 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 FZD1Q9UP38 647 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 TSPY2A6NKD2 308 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 ST3GAL1Q11201 340 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 FAM47AQ5JRC9 791 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 PPP1R18Q6NYC8 613 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 SMARCC2Q8TAQ2 1214 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 SPDYE16A6NNV3 312 aaPredicted RBP8.23□□□□□ -1.09
LIMA1-202ENST00000394943 HAND2P61296 217 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 MAP2K1Q02750 393 aaPredicted RBP8.23□□□□□ -1.09
LIMA1-202ENST00000394943 TRDNQ13061 729 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 MTMR2Q13614 643 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 TREML2Q5T2D2 321 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 TRIM34Q9BYJ4 488 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 PNMA3Q9UL41 463 aa8.23□□□□□ -1.09
LIMA1-202ENST00000394943 NMT2O60551 498 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 TLR2O60603 784 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 NKX3-2P78367 333 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 FAM110CQ1W6H9 321 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 BLOC1S2Q6QNY1 142 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 FAM43AQ8N2R8 423 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 LLPHQ9BRT6 129 aaKnown RBP8.22□□□□□ -1.09
LIMA1-202ENST00000394943 SENP2Q9HC62 589 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 RABGAP1Q9Y3P9 1069 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 CYP46A1Q9Y6A2 500 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 KIAA1217Q5T5P2 1943 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 CNTNAP5Q8WYK1 1306 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 WTAPQ15007 396 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 TMTC3Q6ZXV5 915 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 RIOX2Q8IUF8 465 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 PNMA1Q8ND90 353 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 RNF186Q9NXI6 227 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 ZNF214Q9UL59 606 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-202ENST00000394943 ESYT2A0FGR8 921 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 PDIA3P30101 505 aaKnown RBP8.22□□□□□ -1.09
LIMA1-202ENST00000394943 GNAQP50148 359 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 SPP2Q13103 211 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 SART3Q15020 963 aaKnown RBP8.22□□□□□ -1.09
LIMA1-202ENST00000394943 CYP4F22Q6NT55 531 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 ZNF654Q8IZM8 581 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 PARK7Q99497 189 aaKnown RBP8.22□□□□□ -1.09
LIMA1-202ENST00000394943 SH3GLB2Q9NR46 395 aa8.22□□□□□ -1.09
LIMA1-202ENST00000394943 MORC2Q9Y6X9 1032 aaPredicted RBP8.22□□□□□ -1.09
LIMA1-202ENST00000394943 DNAJC25-GNG10A0A024R161 153 aa8.21□□□□□ -1.09
LIMA1-202ENST00000394943 CCL15-CCL14A0A0B4J2E2 113 aa8.21□□□□□ -1.09
LIMA1-202ENST00000394943 PRDM1O75626 825 aa8.21□□□□□ -1.09
LIMA1-202ENST00000394943 BMP3P12645 472 aa8.21□□□□□ -1.09
LIMA1-202ENST00000394943 IFNAR1P17181 557 aa8.21□□□□□ -1.09
LIMA1-202ENST00000394943 OSBPP22059 807 aa8.21□□□□□ -1.09
LIMA1-202ENST00000394943 CCL15Q16663 113 aa8.21□□□□□ -1.09
LIMA1-202ENST00000394943 RALYLQ86SE5 291 aaKnown RBP8.21□□□□□ -1.09
LIMA1-202ENST00000394943 ZSCAN31Q96LW9 406 aaPredicted RBP8.21□□□□□ -1.09
LIMA1-202ENST00000394943 ZIC5Q96T25 663 aa8.21□□□□□ -1.09
LIMA1-202ENST00000394943 ASCC2Q9H1I8 757 aaPredicted RBP8.21□□□□□ -1.09
LIMA1-202ENST00000394943 HOXC10Q9NYD6 342 aa8.21□□□□□ -1.09
LIMA1-202ENST00000394943 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.21□□□□□ -1.09
LIMA1-202ENST00000394943 RBPJLQ9UBG7 517 aa8.21□□□□□ -1.09
LIMA1-202ENST00000394943 CLIP2Q9UDT6 1046 aa8.21□□□□□ -1.09
LIMA1-202ENST00000394943 M0R2N6 131 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 PIK3CDO00329 1044 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 VWA5AO00534 786 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 HOXC6P09630 235 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 COG2Q14746 738 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 MORN1Q5T089 497 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 IFIT1BQ5T764 474 aaKnown RBP8.21□□□□□ -1.1
LIMA1-202ENST00000394943 SLFN13Q68D06 897 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 ZNF467Q7Z7K2 595 aaPredicted RBP8.21□□□□□ -1.1
LIMA1-202ENST00000394943 DAGLBQ8NCG7 672 aa8.21□□□□□ -1.1
LIMA1-202ENST00000394943 CHMP4CQ96CF2 233 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms