RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 C21orf2O43822 256 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 SLC16A2P36021 539 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 DHX8Q14562 1220 aaKnown RBP12.69□□□□□ -0.38
TCOF1-203ENST00000394269 JAKMIP3Q5VZ66 844 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 PIGSQ96S52 555 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 TRIM34Q9BYJ4 488 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 FANCLQ9NW38 375 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 FAM205AQ6ZU69 1335 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 A0A087X0B3 334 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 NPY5RQ15761 445 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 CCDC96Q2M329 555 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 LETM2Q2VYF4 491 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 C15orf52Q6ZUT6 534 aaKnown RBP12.69□□□□□ -0.38
TCOF1-203ENST00000394269 C16orf86Q6ZW13 317 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 C16orf45Q96MC5 204 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-203ENST00000394269 MAPK8IP1Q9UQF2 711 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 ARAP2Q8WZ64 1704 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 GNAQP50148 359 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 SLC35G1Q2M3R5 365 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 SOGA3Q5TF21 947 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 CDC42EP5Q6NZY7 148 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 COA7Q96BR5 231 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 ARID3AQ99856 593 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 BIN2Q9UBW5 565 aaPredicted RBP12.69□□□□□ -0.38
TCOF1-203ENST00000394269 SERPINB13Q9UIV8 391 aa12.69□□□□□ -0.38
TCOF1-203ENST00000394269 SMTNL1A8MU46 457 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 SHROOM1Q2M3G4 852 aaPredicted RBP12.68□□□□□ -0.38
TCOF1-203ENST00000394269 DOCK2Q92608 1830 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 SMCO2A6NFE2 343 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 PP2D1A8MPX8 630 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 RBM10P98175 930 aaKnown RBP12.68□□□□□ -0.38
TCOF1-203ENST00000394269 GRM4Q14833 912 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 NEDD1Q8NHV4 660 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 TIGD1Q96MW7 591 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 C4AP0C0L4 1744 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 LAMB2P55268 1798 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 BMP6P22004 513 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 CALML3P27482 149 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 CRKP46108 304 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 UBASH3AP57075 661 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 GOLGA8FQ08AF8 430 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 GOLGA8DPQ0D2H9 430 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 KCTD1Q719H9 257 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 RRP36Q96EU6 259 aaKnown RBP12.68□□□□□ -0.38
TCOF1-203ENST00000394269 MAN1B1Q9UKM7 699 aa12.68□□□□□ -0.38
TCOF1-203ENST00000394269 KLRG2A4D1S0 409 aaPredicted RBP12.67□□□□□ -0.38
TCOF1-203ENST00000394269 SKILP12757 684 aa12.67□□□□□ -0.38
TCOF1-203ENST00000394269 FLAD1Q8NFF5 587 aa12.67□□□□□ -0.38
TCOF1-203ENST00000394269 KIAA1524Q8TCG1 905 aa12.67□□□□□ -0.38
TCOF1-203ENST00000394269 TSC1Q92574 1164 aa12.67□□□□□ -0.38
TCOF1-203ENST00000394269 PCDHA4Q9UN74 947 aa12.67□□□□□ -0.38
TCOF1-203ENST00000394269 DUOX1Q9NRD9 1551 aa12.67□□□□□ -0.38
TCOF1-203ENST00000394269 ECE2O60344 883 aa12.67□□□□□ -0.38
TCOF1-203ENST00000394269 TOP1P11387 765 aaKnown RBP12.67□□□□□ -0.38
TCOF1-203ENST00000394269 FANCCQ00597 558 aa12.67□□□□□ -0.38
TCOF1-203ENST00000394269 IKQ13123 557 aaPredicted RBP12.67□□□□□ -0.38
TCOF1-203ENST00000394269 TPD52L1Q16890 204 aaPredicted RBP12.67□□□□□ -0.38
TCOF1-203ENST00000394269 CCNT1O60563 726 aaKnown RBP12.66□□□□□ -0.38
TCOF1-203ENST00000394269 HLA-DOAP06340 250 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 TPM3P06753 285 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 MYL5Q02045 173 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 KARSQ15046 597 aaKnown RBP12.66□□□□□ -0.38
TCOF1-203ENST00000394269 CCDC178Q5BJE1 867 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 TTBK2Q6IQ55 1244 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 TMC4Q7Z404 712 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 CCDC34Q96HJ3 373 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 SCAF8Q9UPN6 1271 aaKnown RBP12.66□□□□□ -0.38
TCOF1-203ENST00000394269 DPF2Q92785 391 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 TDRD3Q9H7E2 651 aaKnown RBP12.66□□□□□ -0.38
TCOF1-203ENST00000394269 NID2Q14112 1375 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 UQCRHLA0A096LP55 91 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 PPIP5K2O43314 1243 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 RAD17O75943 681 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 UQCRHP07919 91 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 APOBEC3HQ6NTF7 200 aaKnown RBP12.66□□□□□ -0.38
TCOF1-203ENST00000394269 UBE2Q2Q8WVN8 375 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 TMEM260Q9NX78 707 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 STK32BQ9NY57 414 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 TUBE1Q9UJT0 475 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 NFE2L3Q9Y4A8 694 aa12.66□□□□□ -0.38
TCOF1-203ENST00000394269 PALM3A6NDB9 673 aaPredicted RBP12.65□□□□□ -0.38
TCOF1-203ENST00000394269 GDF11O95390 407 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 NCAPHQ15003 741 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 FAM163AQ96GL9 167 aaPredicted RBP12.65□□□□□ -0.38
TCOF1-203ENST00000394269 MTMR4Q9NYA4 1195 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 PCDHA6Q9UN73 950 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 PCDHA8Q9Y5H6 950 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 SNAP25P60880 206 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 FMR1Q06787 632 aaKnown RBP eCLIP12.65□□□□□ -0.385e-7■■■■□ 20.4
TCOF1-203ENST00000394269 DTHD1Q6ZMT9 781 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 LRRC8AQ8IWT6 810 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 CCDC148Q8NFR7 591 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 TNFRSF25Q93038 417 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 FERMT2Q96AC1 680 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 EEF2KMTQ96G04 330 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 PAGE5Q96GU1 130 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 MRFAP1L1Q96HT8 127 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 TMEM60Q9H2L4 133 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 GAKO14976 1311 aa12.65□□□□□ -0.38
TCOF1-203ENST00000394269 ACTN4O43707 911 aaKnown RBP12.65□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms