RNA–Protein interactions for RNA: ENST00000376854.5

C9orf40-201, Transcript of chromosome 9 open reading frame 40, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene C9orf40, Length 2,327 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40-201ENST00000376854 SCN7AQ01118 1682 aa28.64■■■□□ 2.18
C9orf40-201ENST00000376854 CYP2D6P10635 497 aa28.64■■■□□ 2.18
C9orf40-201ENST00000376854 PLA2G4AP47712 749 aa28.64■■■□□ 2.18
C9orf40-201ENST00000376854 ATP8A2Q9NTI2 1148 aa28.64■■■□□ 2.18
C9orf40-201ENST00000376854 TFCP2L1Q9NZI6 479 aa28.64■■■□□ 2.18
C9orf40-201ENST00000376854 VEGFAP15692 232 aaPredicted RBP28.64■■■□□ 2.17
C9orf40-201ENST00000376854 CCT6AP40227 531 aaKnown RBP28.64■■■□□ 2.17
C9orf40-201ENST00000376854 SLC10A5Q5PT55 438 aa28.64■■■□□ 2.17
C9orf40-201ENST00000376854 CNGA4Q8IV77 575 aa28.64■■■□□ 2.17
C9orf40-201ENST00000376854 CNTNAP4Q9C0A0 1308 aa28.63■■■□□ 2.17
C9orf40-201ENST00000376854 GTPBP6O43824 516 aaPredicted RBP28.63■■■□□ 2.17
C9orf40-201ENST00000376854 SEC31AO94979 1220 aaKnown RBP28.63■■■□□ 2.17
C9orf40-201ENST00000376854 GYPCP04921 128 aa28.63■■■□□ 2.17
C9orf40-201ENST00000376854 MTRQ99707 1265 aa28.63■■■□□ 2.17
C9orf40-201ENST00000376854 ITIH6Q6UXX5 1313 aa28.63■■■□□ 2.17
C9orf40-201ENST00000376854 TSPY2A6NKD2 308 aa28.63■■■□□ 2.17
C9orf40-201ENST00000376854 ADAMTS3O15072 1205 aa28.63■■■□□ 2.17
C9orf40-201ENST00000376854 ARPP21Q9UBL0 812 aaPredicted RBP28.63■■■□□ 2.17
C9orf40-201ENST00000376854 RWDD2AQ9UIY3 292 aa28.63■■■□□ 2.17
C9orf40-201ENST00000376854 KRT31Q15323 416 aa28.62■■■□□ 2.17
C9orf40-201ENST00000376854 AMIGO3Q86WK7 504 aa28.62■■■□□ 2.17
C9orf40-201ENST00000376854 LIMA1Q9UHB6 759 aaKnown RBP28.62■■■□□ 2.17
C9orf40-201ENST00000376854 PRDX5P30044 214 aa28.61■■■□□ 2.17
C9orf40-201ENST00000376854 FXR1P51114 621 aaKnown RBP eCLIP28.61■■■□□ 2.17
C9orf40-201ENST00000376854 CCDC51Q96ER9 411 aa28.61■■■□□ 2.17
C9orf40-201ENST00000376854 C8orf37Q96NL8 207 aa28.61■■■□□ 2.17
C9orf40-201ENST00000376854 A0A0U1RQJ8 604 aa28.61■■■□□ 2.17
C9orf40-201ENST00000376854 KIF5CO60282 957 aa28.61■■■□□ 2.17
C9orf40-201ENST00000376854 HIBADHP31937 336 aaKnown RBP28.61■■■□□ 2.17
C9orf40-201ENST00000376854 RPS8P62241 208 aaKnown RBP28.61■■■□□ 2.17
C9orf40-201ENST00000376854 PAK1Q13153 545 aa28.61■■■□□ 2.17
C9orf40-201ENST00000376854 RASGRP2Q7LDG7 609 aa28.61■■■□□ 2.17
C9orf40-201ENST00000376854 ATRIPQ8WXE1 791 aa28.61■■■□□ 2.17
C9orf40-201ENST00000376854 RABGGTAQ92696 567 aa28.61■■■□□ 2.17
C9orf40-201ENST00000376854 GOLGA1Q92805 767 aa28.61■■■□□ 2.17
C9orf40-201ENST00000376854 JAG2Q9Y219 1238 aa28.61■■■□□ 2.17
C9orf40-201ENST00000376854 PDS5AQ29RF7 1337 aaKnown RBP28.61■■■□□ 2.17
C9orf40-201ENST00000376854 N4BP3O15049 544 aa28.6■■■□□ 2.17
C9orf40-201ENST00000376854 KIF5BP33176 963 aa28.6■■■□□ 2.17
C9orf40-201ENST00000376854 SBK1Q52WX2 424 aa28.6■■■□□ 2.17
C9orf40-201ENST00000376854 SLC51AQ86UW1 340 aa28.6■■■□□ 2.17
C9orf40-201ENST00000376854 ATP8B1O43520 1251 aa28.6■■■□□ 2.17
C9orf40-201ENST00000376854 CC2D1AQ6P1N0 951 aaPredicted RBP28.6■■■□□ 2.17
C9orf40-201ENST00000376854 NBPF5PQ86XG9 351 aaPredicted RBP28.6■■■□□ 2.17
C9orf40-201ENST00000376854 NARFQ9UHQ1 456 aa28.6■■■□□ 2.17
C9orf40-201ENST00000376854 LRRC10BA6NIK2 292 aa28.59■■■□□ 2.17
C9orf40-201ENST00000376854 CALML3P27482 149 aa28.59■■■□□ 2.17
C9orf40-201ENST00000376854 FAM182BQ5T319 152 aa28.59■■■□□ 2.17
C9orf40-201ENST00000376854 ARL6IP4Q66PJ3 421 aaKnown RBP28.59■■■□□ 2.17
C9orf40-201ENST00000376854 RCSD1Q6JBY9 416 aa28.59■■■□□ 2.17
C9orf40-201ENST00000376854 SETDB2Q96T68 719 aa28.59■■■□□ 2.17
C9orf40-201ENST00000376854 ZNF658Q5TYW1 1059 aaPredicted RBP28.59■■■□□ 2.17
C9orf40-201ENST00000376854 NELFBQ8WX92 580 aa28.59■■■□□ 2.17
C9orf40-201ENST00000376854 RMND1Q9NWS8 449 aa28.59■■■□□ 2.17
C9orf40-201ENST00000376854 GNPATO15228 680 aa28.58■■■□□ 2.17
C9orf40-201ENST00000376854 FECHP22830 423 aa28.58■■■□□ 2.17
C9orf40-201ENST00000376854 LONP1P36776 959 aaKnown RBP28.58■■■□□ 2.17
C9orf40-201ENST00000376854 FAM193AP78312 1265 aa28.58■■■□□ 2.17
C9orf40-201ENST00000376854 SPAG1Q07617 926 aa28.58■■■□□ 2.17
C9orf40-201ENST00000376854 BLIDQ8IZY5 108 aa28.58■■■□□ 2.17
C9orf40-201ENST00000376854 NLRP3Q96P20 1036 aa28.58■■■□□ 2.17
C9orf40-201ENST00000376854 PARD6BQ9BYG5 372 aa28.58■■■□□ 2.17
C9orf40-201ENST00000376854 VPS16Q9H269 839 aa28.58■■■□□ 2.17
C9orf40-201ENST00000376854 KAT14Q9H8E8 782 aa28.58■■■□□ 2.17
C9orf40-201ENST00000376854 ZNF831Q5JPB2 1677 aa28.58■■■□□ 2.17
C9orf40-201ENST00000376854 RPN1P04843 607 aaKnown RBP28.58■■■□□ 2.17
C9orf40-201ENST00000376854 ANKRD20A12PQ8NF67 263 aa28.58■■■□□ 2.17
C9orf40-201ENST00000376854 TXLNAP40222 546 aa28.57■■■□□ 2.16
C9orf40-201ENST00000376854 COPB1P53618 953 aaKnown RBP28.57■■■□□ 2.16
C9orf40-201ENST00000376854 SLC4A8Q2Y0W8 1093 aa28.57■■■□□ 2.16
C9orf40-201ENST00000376854 TXNRD3Q86VQ6 643 aa28.57■■■□□ 2.16
C9orf40-201ENST00000376854 C4orf32Q8N8J7 132 aa28.57■■■□□ 2.16
C9orf40-201ENST00000376854 NGLY1Q96IV0 654 aa28.57■■■□□ 2.16
C9orf40-201ENST00000376854 MCM9Q9NXL9 1143 aa28.57■■■□□ 2.16
C9orf40-201ENST00000376854 TAB2Q9NYJ8 693 aa28.57■■■□□ 2.16
C9orf40-201ENST00000376854 TBC1D8O95759 1140 aa28.57■■■□□ 2.16
C9orf40-201ENST00000376854 TCP11X2Q5H9J9 407 aa28.57■■■□□ 2.16
C9orf40-201ENST00000376854 ZNF569Q5MCW4 686 aa28.57■■■□□ 2.16
C9orf40-201ENST00000376854 KCNJ18B7U540 433 aa28.56■■■□□ 2.16
C9orf40-201ENST00000376854 RPS6KA4O75676 772 aa28.56■■■□□ 2.16
C9orf40-201ENST00000376854 CDC25AP30304 524 aa28.56■■■□□ 2.16
C9orf40-201ENST00000376854 KCNJ12Q14500 433 aa28.56■■■□□ 2.16
C9orf40-201ENST00000376854 TMTC1Q8IUR5 882 aa28.56■■■□□ 2.16
C9orf40-201ENST00000376854 CREBRFQ8IUR6 639 aa28.56■■■□□ 2.16
C9orf40-201ENST00000376854 GPKOWQ92917 476 aaPredicted RBP eCLIP28.56■■■□□ 2.16
C9orf40-201ENST00000376854 ABHD10Q9NUJ1 306 aa28.56■■■□□ 2.16
C9orf40-201ENST00000376854 BAZ2BQ9UIF8 2168 aaKnown RBP28.56■■■□□ 2.16
C9orf40-201ENST00000376854 STAT6P42226 847 aa28.55■■■□□ 2.16
C9orf40-201ENST00000376854 NYXQ9GZU5 481 aa28.55■■■□□ 2.16
C9orf40-201ENST00000376854 ANKRD2Q9GZV1 360 aa28.55■■■□□ 2.16
C9orf40-201ENST00000376854 TTF2Q9UNY4 1162 aaKnown RBP28.55■■■□□ 2.16
C9orf40-201ENST00000376854 FAM205AQ6ZU69 1335 aa28.55■■■□□ 2.16
C9orf40-201ENST00000376854 CHMP4BP1P59074 171 aa28.55■■■□□ 2.16
C9orf40-201ENST00000376854 SRGAP1Q7Z6B7 1085 aa28.55■■■□□ 2.16
C9orf40-201ENST00000376854 ACRBPQ8NEB7 543 aa28.55■■■□□ 2.16
C9orf40-201ENST00000376854 NUP88Q99567 741 aaPredicted RBP28.55■■■□□ 2.16
C9orf40-201ENST00000376854 ZSWIM4Q9H7M6 989 aa28.55■■■□□ 2.16
C9orf40-201ENST00000376854 ARFGAP3Q9NP61 516 aa28.55■■■□□ 2.16
C9orf40-201ENST00000376854 SH3GLB2Q9NR46 395 aa28.55■■■□□ 2.16
C9orf40-201ENST00000376854 PCDHA4Q9UN74 947 aa28.55■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms