RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 CUTAO60888 179 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 GDAP1L1Q96MZ0 367 aa12.74□□□□□ -0.37
VPS13A-205ENST00000376636 CNOT10Q9H9A5 744 aaKnown RBP12.74□□□□□ -0.37
VPS13A-205ENST00000376636 CAPN9O14815 690 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 ARHGEF18Q6ZSZ5 1173 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 CREB3O43889 395 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 RCN2Q14257 317 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 RPS6KC1Q96S38 1066 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 CREB3L3Q68CJ9 461 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 SYCE1LA8MT33 242 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 SERPINB2P05120 415 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 CALCRLQ16602 461 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 NT5C3AQ9H0P0 336 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 MAGEA1P43355 309 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 HYOU1Q9Y4L1 999 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 ZNF644Q9H582 1327 aaPredicted RBP12.73□□□□□ -0.37
VPS13A-205ENST00000376636 RNF113AO15541 343 aaKnown RBP12.73□□□□□ -0.37
VPS13A-205ENST00000376636 EXOC3O60645 756 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 ATF7P17544 494 aaPredicted RBP12.73□□□□□ -0.37
VPS13A-205ENST00000376636 SKOR1P84550 965 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 GLE1Q53GS7 698 aaKnown RBP12.73□□□□□ -0.37
VPS13A-205ENST00000376636 N4BP2L2Q92802 583 aaPredicted RBP12.73□□□□□ -0.37
VPS13A-205ENST00000376636 NR1I2O75469 434 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 PPP2R5AQ15172 486 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 C2CD5Q86YS7 1000 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 PICK1Q9NRD5 415 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 FGD5Q6ZNL6 1462 aa12.73□□□□□ -0.37
VPS13A-205ENST00000376636 ZRANB2O95218 330 aaKnown RBP eCLIP12.72□□□□□ -0.373e-7■■■■■ 46.6
VPS13A-205ENST00000376636 PPP2R5BQ15173 497 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 AZI2Q9H6S1 392 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 TYW1BQ6NUM6 668 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 EP400NLQ6ZTU2 488 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 PLIN2Q99541 437 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 TRPA1O75762 1119 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 GIPC2Q8TF65 315 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 H3BRJ5 948 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 EXOC5O00471 708 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 MAP3K10Q02779 954 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 APOBRQ0VD83 1088 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 MCF2L2Q86YR7 1114 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 TRIM59Q8IWR1 403 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 C16orf71Q8IYS4 520 aaPredicted RBP12.72□□□□□ -0.37
VPS13A-205ENST00000376636 MRFAP1Q9Y605 127 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 F8W8V4 182 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 MYCT1Q8N699 235 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 NELFBQ8WX92 580 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.72□□□□□ -0.37
VPS13A-205ENST00000376636 ZNF219Q9P2Y4 722 aaPredicted RBP12.72□□□□□ -0.37
VPS13A-205ENST00000376636 ATAD2BQ9ULI0 1458 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 NLRP12P59046 1061 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 NEUROG2Q9H2A3 272 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 PDE6CP51160 858 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 KCNK3O14649 394 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 KRT19P08727 400 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 CD19P15391 556 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 ANO1Q5XXA6 986 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 ENAHQ8N8S7 591 aaPredicted RBP12.72□□□□□ -0.37
VPS13A-205ENST00000376636 GFM2Q969S9 779 aaKnown RBP12.72□□□□□ -0.37
VPS13A-205ENST00000376636 RPSAP08865 295 aaKnown RBP12.72□□□□□ -0.37
VPS13A-205ENST00000376636 CCHCR1Q8TD31 782 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 NLRP3Q96P20 1036 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 INTS9Q9NV88 658 aaKnown RBP12.72□□□□□ -0.37
VPS13A-205ENST00000376636 KDM2BQ8NHM5 1336 aa12.72□□□□□ -0.37
VPS13A-205ENST00000376636 ZNF202O95125 648 aa12.71□□□□□ -0.37
VPS13A-205ENST00000376636 LDHBP07195 334 aaKnown RBP12.71□□□□□ -0.37
VPS13A-205ENST00000376636 SPDYE2BA6NHP3 402 aa12.71□□□□□ -0.37
VPS13A-205ENST00000376636 EIF3DO15371 548 aaKnown RBP eCLIP12.71□□□□□ -0.373e-6■■□□□ 12.2
VPS13A-205ENST00000376636 HEXIM1O94992 359 aaKnown RBP12.71□□□□□ -0.37
VPS13A-205ENST00000376636 SPDYE6P0CI01 402 aa12.71□□□□□ -0.37
VPS13A-205ENST00000376636 ARHGAP44Q17R89 818 aa12.71□□□□□ -0.37
VPS13A-205ENST00000376636 SMYD2Q9NRG4 433 aa12.71□□□□□ -0.37
VPS13A-205ENST00000376636 ASXL1Q8IXJ9 1541 aa12.71□□□□□ -0.37
VPS13A-205ENST00000376636 SERPINB10P48595 397 aa12.71□□□□□ -0.37
VPS13A-205ENST00000376636 POLE2P56282 527 aa12.71□□□□□ -0.37
VPS13A-205ENST00000376636 HDAC4P56524 1084 aa12.71□□□□□ -0.37
VPS13A-205ENST00000376636 ART3Q13508 389 aa12.71□□□□□ -0.37
VPS13A-205ENST00000376636 DIABLOQ9NR28 239 aa12.71□□□□□ -0.37
VPS13A-205ENST00000376636 MYO1AQ9UBC5 1043 aa12.71□□□□□ -0.37
VPS13A-205ENST00000376636 TNNI1P19237 187 aa12.71□□□□□ -0.38
VPS13A-205ENST00000376636 IFNL2Q8IZJ0 200 aa12.71□□□□□ -0.38
VPS13A-205ENST00000376636 TMEM87BQ96K49 555 aa12.71□□□□□ -0.38
VPS13A-205ENST00000376636 PYGBP11216 843 aa12.71□□□□□ -0.38
VPS13A-205ENST00000376636 TCP1P17987 556 aaKnown RBP12.71□□□□□ -0.38
VPS13A-205ENST00000376636 ITKQ08881 620 aa12.71□□□□□ -0.38
VPS13A-205ENST00000376636 ATP5J2-PTCD1G3V325 749 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 NSFP46459 744 aaKnown RBP12.7□□□□□ -0.38
VPS13A-205ENST00000376636 YARSP54577 528 aaKnown RBP12.7□□□□□ -0.38
VPS13A-205ENST00000376636 IFT88Q13099 833 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 ZNF174Q15697 407 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 TMEM232C9JQI7 657 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 TRMT10CQ7L0Y3 403 aaKnown RBP12.7□□□□□ -0.38
VPS13A-205ENST00000376636 OTUD6AQ7L8S5 288 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.7□□□□□ -0.382e-8■■■■■ 39.2
VPS13A-205ENST00000376636 ANKRD2Q9GZV1 360 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 NBPF14Q5TI25 921 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 TTC19Q6DKK2 380 aaPredicted RBP12.7□□□□□ -0.38
VPS13A-205ENST00000376636 TRIML2Q8N7C3 387 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 TRAIPQ9BWF2 469 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 GRIN1Q05586 938 aa12.7□□□□□ -0.38
VPS13A-205ENST00000376636 A6NJR5 290 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms