RNA–Protein interactions for RNA: ENST00000375271.4

PTCH1-202, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,058 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-202ENST00000375271 SNX17Q15036 470 aa17.01■□□□□ 0.31
PTCH1-202ENST00000375271 LCORLQ8N3X6 602 aa17.01■□□□□ 0.31
PTCH1-202ENST00000375271 RHPN1Q8TCX5 695 aa17.01■□□□□ 0.31
PTCH1-202ENST00000375271 SYMPKQ92797 1274 aaKnown RBP17.01■□□□□ 0.31
PTCH1-202ENST00000375271 KIF1BPQ96EK5 621 aa17.01■□□□□ 0.31
PTCH1-202ENST00000375271 ARMT1Q9H993 441 aa17.01■□□□□ 0.31
PTCH1-202ENST00000375271 ATP8A2Q9NTI2 1148 aa17.01■□□□□ 0.31
PTCH1-202ENST00000375271 TMX2Q9Y320 296 aa17.01■□□□□ 0.31
PTCH1-202ENST00000375271 MBD4O95243 580 aa17■□□□□ 0.31
PTCH1-202ENST00000375271 CYP2D6P10635 497 aa17■□□□□ 0.31
PTCH1-202ENST00000375271 AKR1A1P14550 325 aa17■□□□□ 0.31
PTCH1-202ENST00000375271 C1orf53Q5VUE5 145 aa17■□□□□ 0.31
PTCH1-202ENST00000375271 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17■□□□□ 0.31
PTCH1-202ENST00000375271 NUP133Q8WUM0 1156 aa17■□□□□ 0.31
PTCH1-202ENST00000375271 DYNLL2Q96FJ2 89 aa17■□□□□ 0.31
PTCH1-202ENST00000375271 TMEM39AQ9NV64 488 aa17■□□□□ 0.31
PTCH1-202ENST00000375271 TMEM265A0A087WTH1 108 aa16.99■□□□□ 0.31
PTCH1-202ENST00000375271 DCDC2CA8MYV0 355 aa16.99■□□□□ 0.31
PTCH1-202ENST00000375271 PGK1P00558 417 aa16.99■□□□□ 0.31
PTCH1-202ENST00000375271 PGK2P07205 417 aa16.99■□□□□ 0.31
PTCH1-202ENST00000375271 MS4A1P11836 297 aa16.99■□□□□ 0.31
PTCH1-202ENST00000375271 AKR1B1P15121 316 aa16.99■□□□□ 0.31
PTCH1-202ENST00000375271 STAT3P40763 770 aa16.99■□□□□ 0.31
PTCH1-202ENST00000375271 FPGSQ05932 587 aa16.99■□□□□ 0.31
PTCH1-202ENST00000375271 CCDC174Q6PII3 467 aa16.99■□□□□ 0.31
PTCH1-202ENST00000375271 SH3RF1Q7Z6J0 888 aa16.99■□□□□ 0.31
PTCH1-202ENST00000375271 CLEC10AQ8IUN9 316 aa16.99■□□□□ 0.31
PTCH1-202ENST00000375271 TINF2Q9BSI4 451 aa16.99■□□□□ 0.31
PTCH1-202ENST00000375271 PHF24Q9UPV7 400 aa16.99■□□□□ 0.31
PTCH1-202ENST00000375271 TRIM43BA6NCK2 446 aa16.98■□□□□ 0.31
PTCH1-202ENST00000375271 HNRNPUQ00839 825 aaKnown RBP eCLIP16.98■□□□□ 0.31
PTCH1-202ENST00000375271 TMEM132BQ14DG7 1078 aa16.98■□□□□ 0.31
PTCH1-202ENST00000375271 RIOX2Q8IUF8 465 aa16.98■□□□□ 0.31
PTCH1-202ENST00000375271 TRIM43Q96BQ3 446 aaPredicted RBP16.98■□□□□ 0.31
PTCH1-202ENST00000375271 DDX11Q96FC9 970 aa16.98■□□□□ 0.31
PTCH1-202ENST00000375271 KANSL2Q9H9L4 492 aa16.98■□□□□ 0.31
PTCH1-202ENST00000375271 SPC25Q9HBM1 224 aa16.98■□□□□ 0.31
PTCH1-202ENST00000375271 STARD7Q9NQZ5 370 aa16.98■□□□□ 0.31
PTCH1-202ENST00000375271 PAG1Q9NWQ8 432 aa16.98■□□□□ 0.31
PTCH1-202ENST00000375271 A0A1W2PQ45 241 aaPredicted RBP16.97■□□□□ 0.31
PTCH1-202ENST00000375271 A0A1W2PQY0 241 aa16.97■□□□□ 0.31
PTCH1-202ENST00000375271 IGHA2P01877 340 aa16.97■□□□□ 0.31
PTCH1-202ENST00000375271 RLBP1P12271 317 aa16.97■□□□□ 0.31
PTCH1-202ENST00000375271 SLC4A3P48751 1232 aa16.97■□□□□ 0.31
PTCH1-202ENST00000375271 CDK8P49336 464 aa16.97■□□□□ 0.31
PTCH1-202ENST00000375271 ZSCAN25Q6NSZ9 544 aa16.97■□□□□ 0.31
PTCH1-202ENST00000375271 VTI1AQ96AJ9 217 aa16.97■□□□□ 0.31
PTCH1-202ENST00000375271 ZHX1Q9UKY1 873 aaPredicted RBP16.97■□□□□ 0.31
PTCH1-202ENST00000375271 DIS3Q9Y2L1 958 aaKnown RBP16.97■□□□□ 0.31
PTCH1-202ENST00000375271 MROH7Q68CQ1 1323 aa16.96■□□□□ 0.31
PTCH1-202ENST00000375271 EEF2P13639 858 aaKnown RBP16.96■□□□□ 0.31
PTCH1-202ENST00000375271 EVX2Q03828 476 aa16.96■□□□□ 0.31
PTCH1-202ENST00000375271 KIAA1755Q5JYT7 1200 aa16.96■□□□□ 0.31
PTCH1-202ENST00000375271 FAM184BQ9ULE4 1060 aa16.96■□□□□ 0.31
PTCH1-202ENST00000375271 PPP1R9AQ9ULJ8 1098 aa16.96■□□□□ 0.31
PTCH1-202ENST00000375271 PLXNA1Q9UIW2 1896 aa16.96■□□□□ 0.31
PTCH1-202ENST00000375271 ZNFX1Q9P2E3 1918 aaKnown RBP16.96■□□□□ 0.3
PTCH1-202ENST00000375271 ROBO3Q96MS0 1386 aa16.95■□□□□ 0.3
PTCH1-202ENST00000375271 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.95■□□□□ 0.3
PTCH1-202ENST00000375271 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.95■□□□□ 0.3
PTCH1-202ENST00000375271 TCRBV5S4A2TA0A5A2 114 aa16.95■□□□□ 0.3
PTCH1-202ENST00000375271 USP17L12C9JPN9 530 aa16.95■□□□□ 0.3
PTCH1-202ENST00000375271 USP17L21D6R901 530 aa16.95■□□□□ 0.3
PTCH1-202ENST00000375271 VWA5AO00534 786 aa16.95■□□□□ 0.3
PTCH1-202ENST00000375271 FAM83BQ5T0W9 1011 aa16.95■□□□□ 0.3
PTCH1-202ENST00000375271 CCDC129Q6ZRS4 1044 aa16.95■□□□□ 0.3
PTCH1-202ENST00000375271 C16orf86Q6ZW13 317 aa16.95■□□□□ 0.3
PTCH1-202ENST00000375271 GLT1D1Q96MS3 346 aa16.95■□□□□ 0.3
PTCH1-202ENST00000375271 TSEN34Q9BSV6 310 aaKnown RBP16.95■□□□□ 0.3
PTCH1-202ENST00000375271 TEX13BQ9BXU2 312 aa16.95■□□□□ 0.3
PTCH1-202ENST00000375271 TTYH1Q9H313 450 aaPredicted RBP16.95■□□□□ 0.3
PTCH1-202ENST00000375271 BOLA2Q9H3K6 86 aa16.95■□□□□ 0.3
PTCH1-202ENST00000375271 SLC4A4Q9Y6R1 1079 aa16.95■□□□□ 0.3
PTCH1-202ENST00000375271 BAZ2AQ9UIF9 1905 aaKnown RBP16.95■□□□□ 0.3
PTCH1-202ENST00000375271 COL11A1P12107 1806 aaPredicted RBP16.95■□□□□ 0.3
PTCH1-202ENST00000375271 EYSQ5T1H1 3165 aa16.94■□□□□ 0.3
PTCH1-202ENST00000375271 MOXD2PA6NHM9 499 aa16.94■□□□□ 0.3
PTCH1-202ENST00000375271 KIAA0355O15063 1070 aa16.94■□□□□ 0.3
PTCH1-202ENST00000375271 PRKAB2O43741 272 aa16.94■□□□□ 0.3
PTCH1-202ENST00000375271 RAB11FIP3O75154 756 aa16.94■□□□□ 0.3
PTCH1-202ENST00000375271 DNAJB2P25686 324 aa16.94■□□□□ 0.3
PTCH1-202ENST00000375271 ADD2P35612 726 aa16.94■□□□□ 0.3
PTCH1-202ENST00000375271 ZNF792Q3KQV3 632 aa16.94■□□□□ 0.3
PTCH1-202ENST00000375271 C12orf60Q5U649 245 aa16.94■□□□□ 0.3
PTCH1-202ENST00000375271 SNRNP48Q6IEG0 339 aaKnown RBP16.94■□□□□ 0.3
PTCH1-202ENST00000375271 PANK1Q8TE04 598 aa16.94■□□□□ 0.3
PTCH1-202ENST00000375271 SLF1Q9BQI6 1058 aa16.94■□□□□ 0.3
PTCH1-202ENST00000375271 CHMP4BQ9H444 224 aaKnown RBP16.94■□□□□ 0.3
PTCH1-202ENST00000375271 MKNK2Q9HBH9 465 aa16.94■□□□□ 0.3
PTCH1-202ENST00000375271 FBXO28Q9NVF7 368 aa16.94■□□□□ 0.3
PTCH1-202ENST00000375271 ARPP21Q9UBL0 812 aaPredicted RBP16.94■□□□□ 0.3
PTCH1-202ENST00000375271 ISY1Q9ULR0 285 aaKnown RBP16.94■□□□□ 0.3
PTCH1-202ENST00000375271 CYP2D7A0A087X1C5 515 aa16.93■□□□□ 0.3
PTCH1-202ENST00000375271 ACLYP53396 1101 aa16.93■□□□□ 0.3
PTCH1-202ENST00000375271 PPIGQ13427 754 aaKnown RBP eCLIP16.93■□□□□ 0.3
PTCH1-202ENST00000375271 RPAP2Q8IXW5 612 aaPredicted RBP16.93■□□□□ 0.3
PTCH1-202ENST00000375271 MSL3Q8N5Y2 521 aaKnown RBP16.93■□□□□ 0.3
PTCH1-202ENST00000375271 PCSK9Q8NBP7 692 aaKnown RBP16.93■□□□□ 0.3
PTCH1-202ENST00000375271 TOX2Q96NM4 488 aa16.93■□□□□ 0.3
PTCH1-202ENST00000375271 GAS2L1Q99501 681 aaPredicted RBP16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms