RNA–Protein interactions for RNA: ENST00000375218.3

UBR4-201, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 2 BASIC

Gene UBR4, Length 4,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-201ENST00000375218 FAPQ12884 760 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 ZBTB17Q13105 803 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 PAK2Q13177 524 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 CRTC2Q53ET0 693 aaPredicted RBP10.23□□□□□ -0.77
UBR4-201ENST00000375218 HIBCHQ6NVY1 386 aaPredicted RBP10.23□□□□□ -0.77
UBR4-201ENST00000375218 ARMC9Q7Z3E5 817 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 SLC44A2Q8IWA5 706 aaPredicted RBP10.23□□□□□ -0.77
UBR4-201ENST00000375218 NACC2Q96BF6 587 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 HAUS7Q99871 368 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 TCHPQ9BT92 498 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 ZCCHC17Q9NP64 241 aaKnown RBP10.23□□□□□ -0.77
UBR4-201ENST00000375218 AASDHPPTQ9NRN7 309 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 EIF2B4Q9UI10 523 aaKnown RBP10.23□□□□□ -0.77
UBR4-201ENST00000375218 TSR3Q9UJK0 312 aaKnown RBP10.23□□□□□ -0.77
UBR4-201ENST00000375218 C2orf81A6NN90 581 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 GJA8P48165 433 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 SHROOM1Q2M3G4 852 aaPredicted RBP10.23□□□□□ -0.77
UBR4-201ENST00000375218 SWSAP1Q6NVH7 229 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 BARD1Q99728 777 aaKnown RBP10.23□□□□□ -0.77
UBR4-201ENST00000375218 DDX41Q9UJV9 622 aaKnown RBP10.23□□□□□ -0.77
UBR4-201ENST00000375218 USP19O94966 1318 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 PHLPP1O60346 1717 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 FAM25EA8MYX2 175 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 F2P00734 622 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 INPP5BP32019 993 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 SEPHS1P49903 392 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 WASHC4Q2M389 1173 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 WWC2Q6AWC2 1192 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 TRIM22Q8IYM9 498 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 TAB3Q8N5C8 712 aaPredicted RBP10.23□□□□□ -0.77
UBR4-201ENST00000375218 CLMNQ96JQ2 1002 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 MKNK1Q9BUB5 465 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 C2orf49Q9BVC5 232 aaPredicted RBP10.23□□□□□ -0.77
UBR4-201ENST00000375218 VPS45Q9NRW7 570 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 ETAA1Q9NY74 926 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 SORBS3O60504 671 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 CTNNA1P35221 906 aaKnown RBP10.23□□□□□ -0.77
UBR4-201ENST00000375218 CYP26C1Q6V0L0 522 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 CCDC129Q6ZRS4 1044 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 KIF3AQ9Y496 699 aa10.23□□□□□ -0.77
UBR4-201ENST00000375218 TJP1Q07157 1748 aa10.22□□□□□ -0.77
UBR4-201ENST00000375218 KLHL41O60662 606 aa10.22□□□□□ -0.77
UBR4-201ENST00000375218 IMMTQ16891 758 aaKnown RBP10.22□□□□□ -0.77
UBR4-201ENST00000375218 DNAJB7Q7Z6W7 309 aaPredicted RBP10.22□□□□□ -0.77
UBR4-201ENST00000375218 ZNF75CPQ92670 426 aaPredicted RBP10.22□□□□□ -0.77
UBR4-201ENST00000375218 ALG1Q9BT22 464 aa10.22□□□□□ -0.77
UBR4-201ENST00000375218 INCENPQ9NQS7 918 aa10.22□□□□□ -0.77
UBR4-201ENST00000375218 CNTN3Q9P232 1028 aa10.22□□□□□ -0.77
UBR4-201ENST00000375218 SF3B3Q15393 1217 aaKnown RBP10.22□□□□□ -0.77
UBR4-201ENST00000375218 TTC19Q6DKK2 380 aaPredicted RBP10.22□□□□□ -0.77
UBR4-201ENST00000375218 ZSCAN29Q8IWY8 852 aaPredicted RBP10.22□□□□□ -0.77
UBR4-201ENST00000375218 SUN5Q8TC36 379 aa10.22□□□□□ -0.77
UBR4-201ENST00000375218 PHOX2BQ99453 314 aa10.22□□□□□ -0.77
UBR4-201ENST00000375218 TRIM55Q9BYV6 548 aa10.22□□□□□ -0.77
UBR4-201ENST00000375218 TMEM94Q12767 1356 aa10.22□□□□□ -0.77
UBR4-201ENST00000375218 RRP1P56182 461 aaKnown RBP10.22□□□□□ -0.77
UBR4-201ENST00000375218 IQCA1Q86XH1 822 aa10.22□□□□□ -0.77
UBR4-201ENST00000375218 TRIM42Q8IWZ5 723 aa10.22□□□□□ -0.77
UBR4-201ENST00000375218 ARHGEF2Q92974 986 aaKnown RBP10.22□□□□□ -0.77
UBR4-201ENST00000375218 DDX21Q9NR30 783 aaKnown RBP eCLIP10.22□□□□□ -0.77
UBR4-201ENST00000375218 PIK3CDO00329 1044 aa10.21□□□□□ -0.77
UBR4-201ENST00000375218 CDKL5O76039 1030 aa10.21□□□□□ -0.77
UBR4-201ENST00000375218 ARIH2O95376 493 aa10.21□□□□□ -0.77
UBR4-201ENST00000375218 CYP1A2P05177 515 aa10.21□□□□□ -0.77
UBR4-201ENST00000375218 HSPA1AP0DMV8 641 aaKnown RBP10.21□□□□□ -0.77
UBR4-201ENST00000375218 HSPA1BP0DMV9 641 aaKnown RBP10.21□□□□□ -0.77
UBR4-201ENST00000375218 GOLGA2Q08379 1002 aa10.21□□□□□ -0.77
UBR4-201ENST00000375218 PRPF38BQ5VTL8 546 aaKnown RBP10.21□□□□□ -0.77
UBR4-201ENST00000375218 THEMISQ8N1K5 641 aaPredicted RBP10.21□□□□□ -0.77
UBR4-201ENST00000375218 CCDC8Q9H0W5 538 aaPredicted RBP10.21□□□□□ -0.77
UBR4-201ENST00000375218 PIH1D1Q9NWS0 290 aaKnown RBP10.21□□□□□ -0.77
UBR4-201ENST00000375218 CWC15Q9P013 229 aaKnown RBP10.21□□□□□ -0.77
UBR4-201ENST00000375218 MEGF6O75095 1541 aa10.21□□□□□ -0.78
UBR4-201ENST00000375218 KRT72Q14CN4 511 aa10.21□□□□□ -0.78
UBR4-201ENST00000375218 QPCTQ16769 361 aa10.21□□□□□ -0.78
UBR4-201ENST00000375218 MCTP2Q6DN12 878 aa10.21□□□□□ -0.78
UBR4-201ENST00000375218 DRAXINQ8NBI3 349 aaPredicted RBP10.21□□□□□ -0.78
UBR4-201ENST00000375218 TNIP2Q8NFZ5 429 aa10.21□□□□□ -0.78
UBR4-201ENST00000375218 SLIT2O94813 1529 aa10.21□□□□□ -0.78
UBR4-201ENST00000375218 HNRNPCP07910 306 aaKnown RBP eCLIP10.21□□□□□ -0.78
UBR4-201ENST00000375218 MYBL2P10244 700 aa10.21□□□□□ -0.78
UBR4-201ENST00000375218 PICALMQ13492 652 aa10.21□□□□□ -0.78
UBR4-201ENST00000375218 GPATCH4Q5T3I0 446 aaKnown RBP10.21□□□□□ -0.78
UBR4-201ENST00000375218 IFNL2Q8IZJ0 200 aa10.21□□□□□ -0.78
UBR4-201ENST00000375218 BICD2Q8TD16 824 aa10.21□□□□□ -0.78
UBR4-201ENST00000375218 MTMR8Q96EF0 704 aa10.21□□□□□ -0.78
UBR4-201ENST00000375218 SMYD2Q9NRG4 433 aa10.21□□□□□ -0.78
UBR4-201ENST00000375218 AKAP17AQ02040 695 aaKnown RBP10.2□□□□□ -0.78
UBR4-201ENST00000375218 VWA3BQ502W6 1294 aa10.2□□□□□ -0.78
UBR4-201ENST00000375218 SPATA5Q8NB90 893 aa10.2□□□□□ -0.78
UBR4-201ENST00000375218 ZNF408Q9H9D4 720 aa10.2□□□□□ -0.78
UBR4-201ENST00000375218 PFDN2Q9UHV9 154 aa10.2□□□□□ -0.78
UBR4-201ENST00000375218 TMPOP42166 694 aaKnown RBP10.2□□□□□ -0.78
UBR4-201ENST00000375218 CTCFP49711 727 aaPredicted RBP10.2□□□□□ -0.78
UBR4-201ENST00000375218 SCNN1DP51172 638 aa10.2□□□□□ -0.78
UBR4-201ENST00000375218 CCNG2Q16589 344 aa10.2□□□□□ -0.78
UBR4-201ENST00000375218 THOC1Q96FV9 657 aaKnown RBP10.2□□□□□ -0.78
UBR4-201ENST00000375218 PCSK1NQ9UHG2 260 aa10.2□□□□□ -0.78
UBR4-201ENST00000375218 HOXD11P31277 338 aaPredicted RBP10.2□□□□□ -0.78
UBR4-201ENST00000375218 SMC1AQ14683 1233 aaKnown RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms