RNA–Protein interactions for RNA: ENST00000368671.3

CLRN3-201, Transcript of clarin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLRN3, Length 1,152 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3-201ENST00000368671 TMEM179Q6ZVK1 233 aa12.49□□□□□ -0.41
CLRN3-201ENST00000368671 CLEC10AQ8IUN9 316 aa12.49□□□□□ -0.41
CLRN3-201ENST00000368671 SPRYD3Q8NCJ5 442 aa12.49□□□□□ -0.41
CLRN3-201ENST00000368671 PAG1Q9NWQ8 432 aa12.49□□□□□ -0.41
CLRN3-201ENST00000368671 ZNF236Q9UL36 1845 aa12.48□□□□□ -0.41
CLRN3-201ENST00000368671 C2orf72A6NCS6 295 aa12.48□□□□□ -0.41
CLRN3-201ENST00000368671 SNPHO15079 494 aa12.48□□□□□ -0.41
CLRN3-201ENST00000368671 AKR1B1P15121 316 aa12.48□□□□□ -0.41
CLRN3-201ENST00000368671 CYP2C19P33261 490 aa12.48□□□□□ -0.41
CLRN3-201ENST00000368671 COG2Q14746 738 aa12.48□□□□□ -0.41
CLRN3-201ENST00000368671 LCE2DQ5TA82 110 aaPredicted RBP12.48□□□□□ -0.41
CLRN3-201ENST00000368671 MOV10L1Q9BXT6 1211 aaKnown RBP12.48□□□□□ -0.41
CLRN3-201ENST00000368671 UBE2OQ9C0C9 1292 aaKnown RBP12.48□□□□□ -0.41
CLRN3-201ENST00000368671 ARHGEF10LQ9HCE6 1279 aa12.48□□□□□ -0.41
CLRN3-201ENST00000368671 ZBTB40Q9NUA8 1239 aa12.48□□□□□ -0.41
CLRN3-201ENST00000368671 SWAP70Q9UH65 585 aa12.48□□□□□ -0.41
CLRN3-201ENST00000368671 DDX20Q9UHI6 824 aaKnown RBP12.48□□□□□ -0.41
CLRN3-201ENST00000368671 RLFQ13129 1914 aa12.48□□□□□ -0.41
CLRN3-201ENST00000368671 PARP14Q460N5 1801 aa12.47□□□□□ -0.41
CLRN3-201ENST00000368671 CYP2D7A0A087X1C5 515 aa12.47□□□□□ -0.41
CLRN3-201ENST00000368671 CHGBP05060 677 aa12.47□□□□□ -0.41
CLRN3-201ENST00000368671 HOXC6P09630 235 aa12.47□□□□□ -0.41
CLRN3-201ENST00000368671 ICA1Q05084 483 aa12.47□□□□□ -0.41
CLRN3-201ENST00000368671 PLS1Q14651 629 aa12.47□□□□□ -0.41
CLRN3-201ENST00000368671 KIAA1755Q5JYT7 1200 aa12.47□□□□□ -0.41
CLRN3-201ENST00000368671 DPP9Q86TI2 863 aa12.47□□□□□ -0.41
CLRN3-201ENST00000368671 SPICE1Q8N0Z3 855 aa12.47□□□□□ -0.41
CLRN3-201ENST00000368671 SENP6Q9GZR1 1112 aaPredicted RBP12.47□□□□□ -0.41
CLRN3-201ENST00000368671 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.47□□□□□ -0.41
CLRN3-201ENST00000368671 SPATC1LQ9H0A9 340 aa12.47□□□□□ -0.41
CLRN3-201ENST00000368671 HOXC10Q9NYD6 342 aa12.47□□□□□ -0.41
CLRN3-201ENST00000368671 SMIM22K7EJ46 135 aa12.46□□□□□ -0.41
CLRN3-201ENST00000368671 MSCO60682 206 aa12.46□□□□□ -0.41
CLRN3-201ENST00000368671 FLOT1O75955 427 aa12.46□□□□□ -0.41
CLRN3-201ENST00000368671 ATP5JP18859 108 aa12.46□□□□□ -0.41
CLRN3-201ENST00000368671 ERCC3P19447 782 aa12.46□□□□□ -0.41
CLRN3-201ENST00000368671 ADORA2AP29274 412 aa12.46□□□□□ -0.41
CLRN3-201ENST00000368671 MDM2Q00987 491 aaPredicted RBP12.46□□□□□ -0.41
CLRN3-201ENST00000368671 NCAPG2Q86XI2 1143 aa12.46□□□□□ -0.41
CLRN3-201ENST00000368671 AMOTL1Q8IY63 956 aa12.46□□□□□ -0.41
CLRN3-201ENST00000368671 TDHQ8IZJ6 230 aa12.46□□□□□ -0.41
CLRN3-201ENST00000368671 TRPV1Q8NER1 839 aa12.46□□□□□ -0.41
CLRN3-201ENST00000368671 LPAR1Q92633 364 aa12.46□□□□□ -0.41
CLRN3-201ENST00000368671 HAUS7Q99871 368 aa12.46□□□□□ -0.41
CLRN3-201ENST00000368671 ATP8A2Q9NTI2 1148 aa12.46□□□□□ -0.41
CLRN3-201ENST00000368671 COL11A1P12107 1806 aaPredicted RBP12.46□□□□□ -0.42
CLRN3-201ENST00000368671 USP17L12C9JPN9 530 aa12.45□□□□□ -0.42
CLRN3-201ENST00000368671 USP17L21D6R901 530 aa12.45□□□□□ -0.42
CLRN3-201ENST00000368671 CYBAP13498 195 aa12.45□□□□□ -0.42
CLRN3-201ENST00000368671 HOXB3P14651 431 aaPredicted RBP12.45□□□□□ -0.42
CLRN3-201ENST00000368671 CDK8P49336 464 aa12.45□□□□□ -0.42
CLRN3-201ENST00000368671 C12orf60Q5U649 245 aa12.45□□□□□ -0.42
CLRN3-201ENST00000368671 ANO1Q5XXA6 986 aa12.45□□□□□ -0.42
CLRN3-201ENST00000368671 SIAH1Q8IUQ4 282 aa12.45□□□□□ -0.42
CLRN3-201ENST00000368671 SHCBP1Q8NEM2 672 aa12.45□□□□□ -0.42
CLRN3-201ENST00000368671 ATG4CQ96DT6 458 aa12.45□□□□□ -0.42
CLRN3-201ENST00000368671 DDRGK1Q96HY6 314 aa12.45□□□□□ -0.42
CLRN3-201ENST00000368671 CHMP4BQ9H444 224 aaKnown RBP12.45□□□□□ -0.42
CLRN3-201ENST00000368671 SH2D4AQ9H788 454 aa12.45□□□□□ -0.42
CLRN3-201ENST00000368671 VCPKMTQ9H867 229 aa12.45□□□□□ -0.42
CLRN3-201ENST00000368671 TMX2Q9Y320 296 aa12.45□□□□□ -0.42
CLRN3-201ENST00000368671 SLC4A4Q9Y6R1 1079 aa12.45□□□□□ -0.42
CLRN3-201ENST00000368671 DNM1LO00429 736 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 STRNO43815 780 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 RAD21O60216 631 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 SMARCA5O60264 1052 aaPredicted RBP12.44□□□□□ -0.42
CLRN3-201ENST00000368671 COBLO75128 1261 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 UBE3CQ15386 1083 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 LRIT3Q3SXY7 679 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 GJC2Q5T442 439 aaPredicted RBP12.44□□□□□ -0.42
CLRN3-201ENST00000368671 OLFML2BQ68BL8 750 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 C16orf86Q6ZW13 317 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 Q7L0L9 218 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 MB21D1Q8N884 522 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 SLC17A8Q8NDX2 589 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 TMC2Q8TDI7 906 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 CCDC17Q96LX7 622 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 LRRCC1Q9C099 1032 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 RCAN3Q9UKA8 241 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 TRIOBPQ9H2D6 2365 aa12.44□□□□□ -0.42
CLRN3-201ENST00000368671 WDR46O15213 610 aaKnown RBP12.43□□□□□ -0.42
CLRN3-201ENST00000368671 EEF2P13639 858 aaKnown RBP12.43□□□□□ -0.42
CLRN3-201ENST00000368671 PRAMEF19Q5SWL8 479 aa12.43□□□□□ -0.42
CLRN3-201ENST00000368671 C20orf194Q5TEA3 1177 aa12.43□□□□□ -0.42
CLRN3-201ENST00000368671 ZSCAN25Q6NSZ9 544 aa12.43□□□□□ -0.42
CLRN3-201ENST00000368671 STK11IPQ8N1F8 1099 aa12.43□□□□□ -0.42
CLRN3-201ENST00000368671 DEFB123Q8N688 67 aa12.43□□□□□ -0.42
CLRN3-201ENST00000368671 PUS7LQ9H0K6 701 aaKnown RBP12.43□□□□□ -0.42
CLRN3-201ENST00000368671 MROH8Q9H579 483 aa12.43□□□□□ -0.42
CLRN3-201ENST00000368671 GPHNQ9NQX3 736 aaPredicted RBP12.43□□□□□ -0.42
CLRN3-201ENST00000368671 SLC5A4Q9NY91 659 aa12.43□□□□□ -0.42
CLRN3-201ENST00000368671 LTBP2Q14767 1821 aa12.43□□□□□ -0.42
CLRN3-201ENST00000368671 PLXNA1Q9UIW2 1896 aa12.42□□□□□ -0.42
CLRN3-201ENST00000368671 KBTBD13C9JR72 458 aa12.42□□□□□ -0.42
CLRN3-201ENST00000368671 IGHA2P01877 340 aa12.42□□□□□ -0.42
CLRN3-201ENST00000368671 RTP1P59025 263 aa12.42□□□□□ -0.42
CLRN3-201ENST00000368671 TMEM132BQ14DG7 1078 aa12.42□□□□□ -0.42
CLRN3-201ENST00000368671 CTR9Q6PD62 1173 aa12.42□□□□□ -0.42
CLRN3-201ENST00000368671 MAML3Q96JK9 1138 aa12.42□□□□□ -0.42
CLRN3-201ENST00000368671 LBHD1Q9BQE6 289 aaPredicted RBP12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms