RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 C4orf50Q6ZRC1 276 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 INTS8Q75QN2 995 aaKnown RBP12.09□□□□□ -0.47
CLIP1-203ENST00000361654 FAM114A2Q9NRY5 505 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 ZNF215Q9UL58 517 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-203ENST00000361654 ZNF804BA4D1E1 1349 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 KDM2BQ8NHM5 1336 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 BLMP54132 1417 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-203ENST00000361654 GIGYF1O75420 1035 aaPredicted RBP12.09□□□□□ -0.47
CLIP1-203ENST00000361654 NELFCDQ8IXH7 590 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 MICAL1Q8TDZ2 1067 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 CSRNP1Q96S65 589 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 VPS16Q9H269 839 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 ATP8B3O60423 1300 aa12.09□□□□□ -0.47
CLIP1-203ENST00000361654 CCDC160A6NGH7 325 aa12.08□□□□□ -0.47
CLIP1-203ENST00000361654 LRRIQ4A6NIV6 560 aa12.08□□□□□ -0.47
CLIP1-203ENST00000361654 GTF2F1P35269 517 aaKnown RBP eCLIP12.08□□□□□ -0.47
CLIP1-203ENST00000361654 MCM6Q14566 821 aa12.08□□□□□ -0.47
CLIP1-203ENST00000361654 CIAPIN1Q6FI81 312 aa12.08□□□□□ -0.47
CLIP1-203ENST00000361654 CYP26C1Q6V0L0 522 aa12.08□□□□□ -0.47
CLIP1-203ENST00000361654 SDCCAG8Q86SQ7 713 aaPredicted RBP12.08□□□□□ -0.47
CLIP1-203ENST00000361654 IGSF22Q8N9C0 903 aa12.08□□□□□ -0.47
CLIP1-203ENST00000361654 SNX21Q969T3 373 aa12.08□□□□□ -0.47
CLIP1-203ENST00000361654 TBC1D7Q9P0N9 293 aa12.08□□□□□ -0.47
CLIP1-203ENST00000361654 STAM2O75886 525 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 PCCAP05165 728 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-203ENST00000361654 PCP11498 1178 aaKnown RBP12.08□□□□□ -0.48
CLIP1-203ENST00000361654 NFKBIAP25963 317 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 KLHL30Q0D2K2 578 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 ITSN2Q9NZM3 1697 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 THOC2Q8NI27 1593 aaKnown RBP12.08□□□□□ -0.48
CLIP1-203ENST00000361654 A0A1B0GVL5 298 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 KARSQ15046 597 aaKnown RBP12.08□□□□□ -0.48
CLIP1-203ENST00000361654 AKT3Q9Y243 479 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 SYNRGQ9UMZ2 1314 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 EIF2AK4Q9P2K8 1649 aaKnown RBP12.08□□□□□ -0.48
CLIP1-203ENST00000361654 PHKG2P15735 406 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 FAM8A1Q9UBU6 413 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 PCDHB15Q9Y5E8 787 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 PTPRKQ15262 1439 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 SCYL2Q6P3W7 929 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 GPBP1Q86WP2 473 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 PPFIBP2Q8ND30 876 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 BAG1Q99933 345 aaPredicted RBP12.08□□□□□ -0.48
CLIP1-203ENST00000361654 IFT122Q9HBG6 1241 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 PCDHA12Q9UN75 941 aa12.08□□□□□ -0.48
CLIP1-203ENST00000361654 POLR2DO15514 142 aaKnown RBP12.07□□□□□ -0.48
CLIP1-203ENST00000361654 ABCD1P33897 745 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 RAD51AP2Q09MP3 1159 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 KLHDC4Q8TBB5 520 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 SLC7A3Q8WY07 619 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 TRERF1Q96PN7 1200 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 AMNQ9BXJ7 453 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 PARP2Q9UGN5 583 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 RABGAP1Q9Y3P9 1069 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 F8W8V4 182 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 K7ENM7 598 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 MAN1A1P33908 653 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 TUBB2AQ13885 445 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 GPATCH4Q5T3I0 446 aaKnown RBP12.07□□□□□ -0.48
CLIP1-203ENST00000361654 PARD3BQ8TEW8 1205 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 TUBB2BQ9BVA1 445 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 DSCC1Q9BVC3 393 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 COL17A1Q9UMD9 1497 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-203ENST00000361654 TMEM2Q9UHN6 1383 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 ZNF233A6NK53 670 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 IL13P35225 146 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 GYG1P46976 350 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 POSTNQ15063 836 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 TTLL6Q8N841 843 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 COL4A3BPQ9Y5P4 624 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 ABCC2Q92887 1545 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 CLRN2A0PK11 232 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 I3L4J1 428 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 RPS6KA2Q15349 733 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 SFMBT2Q5VUG0 894 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 PLEKHM2Q8IWE5 1019 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 RSAD2Q8WXG1 361 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 ZSCAN10Q96SZ4 725 aaPredicted RBP12.07□□□□□ -0.48
CLIP1-203ENST00000361654 APOL6Q9BWW8 343 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 RAB20Q9NX57 234 aa12.07□□□□□ -0.48
CLIP1-203ENST00000361654 PRAG1Q86YV5 1406 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 XRCC5P13010 732 aaKnown RBP12.06□□□□□ -0.48
CLIP1-203ENST00000361654 LACTBP83111 547 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-203ENST00000361654 G2E3Q7L622 706 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 FAM178BQ8IXR5 827 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 TSKSQ9UJT2 592 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 CHL1O00533 1208 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 IL6STP40189 918 aaPredicted RBP12.06□□□□□ -0.48
CLIP1-203ENST00000361654 CRKLP46109 303 aaKnown RBP12.06□□□□□ -0.48
CLIP1-203ENST00000361654 ARHGAP44Q17R89 818 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 KRT40Q6A162 431 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 MIS18BP1Q6P0N0 1132 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 ZNF654Q8IZM8 581 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 PNMA1Q8ND90 353 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 STMN2Q93045 179 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 PIM2Q9P1W9 311 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 PCDHA1Q9Y5I3 950 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 MAP3K15Q6ZN16 1313 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 STAT1P42224 750 aa12.06□□□□□ -0.48
CLIP1-203ENST00000361654 MAGEA1P43355 309 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms