RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 C1orf115Q9H7X2 142 aa16.75■□□□□ 0.27
VPS29-201ENST00000360579 VCPKMTQ9H867 229 aa16.75■□□□□ 0.27
VPS29-201ENST00000360579 DIS3Q9Y2L1 958 aaKnown RBP16.75■□□□□ 0.27
VPS29-201ENST00000360579 TMX2Q9Y320 296 aa16.75■□□□□ 0.27
VPS29-201ENST00000360579 MUC3AQ02505 3323 aa16.75■□□□□ 0.27
VPS29-201ENST00000360579 PDE6AP16499 860 aa16.74■□□□□ 0.27
VPS29-201ENST00000360579 COPB2P35606 906 aa16.74■□□□□ 0.27
VPS29-201ENST00000360579 ICA1Q05084 483 aa16.74■□□□□ 0.27
VPS29-201ENST00000360579 KCTD2Q14681 263 aa16.74■□□□□ 0.27
VPS29-201ENST00000360579 MMP19Q99542 508 aa16.74■□□□□ 0.27
VPS29-201ENST00000360579 TINF2Q9BSI4 451 aa16.74■□□□□ 0.27
VPS29-201ENST00000360579 DCP1AQ9NPI6 582 aaPredicted RBP16.74■□□□□ 0.27
VPS29-201ENST00000360579 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.73■□□□□ 0.27
VPS29-201ENST00000360579 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.73■□□□□ 0.27
VPS29-201ENST00000360579 A0A1W2PQ45 241 aaPredicted RBP16.73■□□□□ 0.27
VPS29-201ENST00000360579 A0A1W2PQY0 241 aa16.73■□□□□ 0.27
VPS29-201ENST00000360579 PQBP1O60828 265 aaKnown RBP16.73■□□□□ 0.27
VPS29-201ENST00000360579 AKR1A1P14550 325 aa16.73■□□□□ 0.27
VPS29-201ENST00000360579 ITGB8P26012 769 aa16.73■□□□□ 0.27
VPS29-201ENST00000360579 TMEM132BQ14DG7 1078 aa16.73■□□□□ 0.27
VPS29-201ENST00000360579 KIAA1755Q5JYT7 1200 aa16.73■□□□□ 0.27
VPS29-201ENST00000360579 RIOX2Q8IUF8 465 aa16.73■□□□□ 0.27
VPS29-201ENST00000360579 ITPRIPQ8IWB1 547 aa16.73■□□□□ 0.27
VPS29-201ENST00000360579 SPICE1Q8N0Z3 855 aa16.73■□□□□ 0.27
VPS29-201ENST00000360579 CCDC17Q96LX7 622 aa16.73■□□□□ 0.27
VPS29-201ENST00000360579 TOX2Q96NM4 488 aa16.73■□□□□ 0.27
VPS29-201ENST00000360579 TSEN34Q9BSV6 310 aaKnown RBP16.73■□□□□ 0.27
VPS29-201ENST00000360579 TMEM39AQ9NV64 488 aa16.73■□□□□ 0.27
VPS29-201ENST00000360579 CNPY2Q9Y2B0 182 aa16.73■□□□□ 0.27
VPS29-201ENST00000360579 NAV1Q8NEY1 1877 aa16.72■□□□□ 0.27
VPS29-201ENST00000360579 DCDC2CA8MYV0 355 aa16.72■□□□□ 0.27
VPS29-201ENST00000360579 PGK1P00558 417 aa16.72■□□□□ 0.27
VPS29-201ENST00000360579 HSP90AB4PQ58FF6 505 aa16.72■□□□□ 0.27
VPS29-201ENST00000360579 TJAP1Q5JTD0 557 aa16.72■□□□□ 0.27
VPS29-201ENST00000360579 ANKRD33Q7Z3H0 272 aa16.72■□□□□ 0.27
VPS29-201ENST00000360579 AMOTL1Q8IY63 956 aa16.72■□□□□ 0.27
VPS29-201ENST00000360579 NUP133Q8WUM0 1156 aa16.72■□□□□ 0.27
VPS29-201ENST00000360579 SDR42E1Q8WUS8 393 aa16.72■□□□□ 0.27
VPS29-201ENST00000360579 ADAMTS5Q9UNA0 930 aa16.72■□□□□ 0.27
VPS29-201ENST00000360579 ZNF532Q9HCE3 1301 aa16.71■□□□□ 0.27
VPS29-201ENST00000360579 PGK2P07205 417 aa16.71■□□□□ 0.27
VPS29-201ENST00000360579 AKR1B1P15121 316 aa16.71■□□□□ 0.27
VPS29-201ENST00000360579 DNAJB2P25686 324 aa16.71■□□□□ 0.27
VPS29-201ENST00000360579 EPHB4P54760 987 aa16.71■□□□□ 0.27
VPS29-201ENST00000360579 ZNF792Q3KQV3 632 aa16.71■□□□□ 0.27
VPS29-201ENST00000360579 CCDC174Q6PII3 467 aa16.71■□□□□ 0.27
VPS29-201ENST00000360579 SIAH1Q8IUQ4 282 aa16.71■□□□□ 0.27
VPS29-201ENST00000360579 MSL3Q8N5Y2 521 aaKnown RBP16.71■□□□□ 0.27
VPS29-201ENST00000360579 SLC44A5Q8NCS7 719 aa16.71■□□□□ 0.27
VPS29-201ENST00000360579 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.71■□□□□ 0.27
VPS29-201ENST00000360579 STARD7Q9NQZ5 370 aa16.71■□□□□ 0.27
VPS29-201ENST00000360579 ATP8A2Q9NTI2 1148 aa16.71■□□□□ 0.27
VPS29-201ENST00000360579 MOXD2PA6NHM9 499 aa16.7■□□□□ 0.26
VPS29-201ENST00000360579 ZNF865P0CJ78 1059 aaPredicted RBP16.7■□□□□ 0.26
VPS29-201ENST00000360579 STAT3P40763 770 aa16.7■□□□□ 0.26
VPS29-201ENST00000360579 EVX2Q03828 476 aa16.7■□□□□ 0.26
VPS29-201ENST00000360579 GRIN2CQ14957 1233 aa16.7■□□□□ 0.26
VPS29-201ENST00000360579 CEP85Q6P2H3 762 aa16.7■□□□□ 0.26
VPS29-201ENST00000360579 LCORLQ8N3X6 602 aa16.7■□□□□ 0.26
VPS29-201ENST00000360579 EXOC6BQ9Y2D4 811 aa16.7■□□□□ 0.26
VPS29-201ENST00000360579 MROH7Q68CQ1 1323 aa16.7■□□□□ 0.26
VPS29-201ENST00000360579 TCRBV5S4A2TA0A5A2 114 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 CCER2I3L3R5 266 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 GOLIM4O00461 696 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 VWA5AO00534 786 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 ADAMTS4O75173 837 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 CYP2D6P10635 497 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 ACLYP53396 1101 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 FAAP100Q0VG06 881 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 TIFAQ96CG3 184 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 DYNLL2Q96FJ2 89 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 DDRGK1Q96HY6 314 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 ZNF576Q9H609 170 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 KANSL2Q9H9L4 492 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 GOPCQ9HD26 462 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 PPP1R9AQ9ULJ8 1098 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 SSUH2Q9Y2M2 353 aa16.69■□□□□ 0.26
VPS29-201ENST00000360579 TNFRSF10AO00220 468 aa16.68■□□□□ 0.26
VPS29-201ENST00000360579 TIMP1P01033 207 aa16.68■□□□□ 0.26
VPS29-201ENST00000360579 TAL1P17542 331 aaPredicted RBP16.68■□□□□ 0.26
VPS29-201ENST00000360579 CLEC10AQ8IUN9 316 aa16.68■□□□□ 0.26
VPS29-201ENST00000360579 CLASRPQ8N2M8 674 aaKnown RBP16.68■□□□□ 0.26
VPS29-201ENST00000360579 DNAJC2Q99543 621 aaKnown RBP16.68■□□□□ 0.26
VPS29-201ENST00000360579 ARMT1Q9H993 441 aa16.68■□□□□ 0.26
VPS29-201ENST00000360579 ZNF214Q9UL59 606 aaPredicted RBP16.68■□□□□ 0.26
VPS29-201ENST00000360579 FAM184BQ9ULE4 1060 aa16.68■□□□□ 0.26
VPS29-201ENST00000360579 SYNGAP1Q96PV0 1343 aa16.68■□□□□ 0.26
VPS29-201ENST00000360579 EEF2P13639 858 aaKnown RBP16.67■□□□□ 0.26
VPS29-201ENST00000360579 CDK8P49336 464 aa16.67■□□□□ 0.26
VPS29-201ENST00000360579 PPIGQ13427 754 aaKnown RBP eCLIP16.67■□□□□ 0.26
VPS29-201ENST00000360579 C12orf60Q5U649 245 aa16.67■□□□□ 0.26
VPS29-201ENST00000360579 MFSD5Q6N075 450 aa16.67■□□□□ 0.26
VPS29-201ENST00000360579 C16orf86Q6ZW13 317 aa16.67■□□□□ 0.26
VPS29-201ENST00000360579 RHPN1Q8TCX5 695 aa16.67■□□□□ 0.26
VPS29-201ENST00000360579 GLT1D1Q96MS3 346 aa16.67■□□□□ 0.26
VPS29-201ENST00000360579 GAS2L1Q99501 681 aaPredicted RBP16.67■□□□□ 0.26
VPS29-201ENST00000360579 IL1RAPL2Q9NP60 686 aa16.67■□□□□ 0.26
VPS29-201ENST00000360579 FBXO28Q9NVF7 368 aa16.67■□□□□ 0.26
VPS29-201ENST00000360579 ELP1O95163 1332 aa16.67■□□□□ 0.26
VPS29-201ENST00000360579 SYNRGQ9UMZ2 1314 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms