RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 FOXD4L4Q8WXT5 416 aaPredicted RBP23.07■■□□□ 1.28
CLN3-205ENST00000359984 GMCL1Q96IK5 515 aa23.07■■□□□ 1.28
CLN3-205ENST00000359984 ALG1Q9BT22 464 aa23.07■■□□□ 1.28
CLN3-205ENST00000359984 SH2D4AQ9H788 454 aa23.07■■□□□ 1.28
CLN3-205ENST00000359984 DOCK1Q14185 1865 aa23.07■■□□□ 1.28
CLN3-205ENST00000359984 hCG_1642624A0A1W2PR95 340 aa23.07■■□□□ 1.28
CLN3-205ENST00000359984 VPS37CA5D8V6 355 aaPredicted RBP23.07■■□□□ 1.28
CLN3-205ENST00000359984 DEXIO95424 95 aa23.07■■□□□ 1.28
CLN3-205ENST00000359984 SLC1A4P43007 532 aa23.07■■□□□ 1.28
CLN3-205ENST00000359984 AKAP17AQ02040 695 aaKnown RBP23.07■■□□□ 1.28
CLN3-205ENST00000359984 GPATCH4Q5T3I0 446 aaKnown RBP23.07■■□□□ 1.28
CLN3-205ENST00000359984 KCTD1Q719H9 257 aa23.07■■□□□ 1.28
CLN3-205ENST00000359984 UBA5Q9GZZ9 404 aa23.07■■□□□ 1.28
CLN3-205ENST00000359984 GOPCQ9HD26 462 aa23.07■■□□□ 1.28
CLN3-205ENST00000359984 WDR33Q9C0J8 1336 aaKnown RBP23.07■■□□□ 1.28
CLN3-205ENST00000359984 PDIA4P13667 645 aaKnown RBP23.06■■□□□ 1.28
CLN3-205ENST00000359984 SMARCA1P28370 1054 aa23.06■■□□□ 1.28
CLN3-205ENST00000359984 IREB2P48200 963 aaKnown RBP23.06■■□□□ 1.28
CLN3-205ENST00000359984 FMR1Q06787 632 aaKnown RBP eCLIP23.06■■□□□ 1.28
CLN3-205ENST00000359984 VGLL4Q14135 290 aa23.06■■□□□ 1.28
CLN3-205ENST00000359984 PKN1Q16512 942 aa23.06■■□□□ 1.28
CLN3-205ENST00000359984 TTBK2Q6IQ55 1244 aa23.06■■□□□ 1.28
CLN3-205ENST00000359984 MOB2Q70IA6 237 aa23.06■■□□□ 1.28
CLN3-205ENST00000359984 SPZ1Q9BXG8 430 aa23.06■■□□□ 1.28
CLN3-205ENST00000359984 VCPKMTQ9H867 229 aa23.06■■□□□ 1.28
CLN3-205ENST00000359984 ZSCAN22P10073 491 aaPredicted RBP23.05■■□□□ 1.28
CLN3-205ENST00000359984 ZYXQ15942 572 aaKnown RBP23.05■■□□□ 1.28
CLN3-205ENST00000359984 SPICE1Q8N0Z3 855 aa23.05■■□□□ 1.28
CLN3-205ENST00000359984 PIBF1Q8WXW3 757 aa23.05■■□□□ 1.28
CLN3-205ENST00000359984 WASF1Q92558 559 aa23.05■■□□□ 1.28
CLN3-205ENST00000359984 NUP88Q99567 741 aaPredicted RBP23.05■■□□□ 1.28
CLN3-205ENST00000359984 WDR18Q9BV38 432 aa23.05■■□□□ 1.28
CLN3-205ENST00000359984 GJB4Q9NTQ9 266 aa23.05■■□□□ 1.28
CLN3-205ENST00000359984 SNCAIPQ9Y6H5 919 aa23.05■■□□□ 1.28
CLN3-205ENST00000359984 NBR1Q14596 966 aa23.05■■□□□ 1.28
CLN3-205ENST00000359984 C8orf76Q96K31 380 aa23.05■■□□□ 1.28
CLN3-205ENST00000359984 FEZ1Q99689 392 aa23.05■■□□□ 1.28
CLN3-205ENST00000359984 KIAA1683Q9H0B3 1180 aa23.05■■□□□ 1.28
CLN3-205ENST00000359984 H3BQV1 296 aa23.04■■□□□ 1.28
CLN3-205ENST00000359984 TTLL12Q14166 644 aaPredicted RBP23.04■■□□□ 1.28
CLN3-205ENST00000359984 MAP3K11Q16584 847 aa23.04■■□□□ 1.28
CLN3-205ENST00000359984 IFFO2Q5TF58 517 aa23.04■■□□□ 1.28
CLN3-205ENST00000359984 OTUD7BQ6GQQ9 843 aa23.04■■□□□ 1.28
CLN3-205ENST00000359984 TNPO1Q92973 898 aaKnown RBP23.04■■□□□ 1.28
CLN3-205ENST00000359984 ISY1Q9ULR0 285 aaKnown RBP23.04■■□□□ 1.28
CLN3-205ENST00000359984 BMP3P12645 472 aa23.03■■□□□ 1.28
CLN3-205ENST00000359984 GUCY1B3Q02153 619 aa23.03■■□□□ 1.28
CLN3-205ENST00000359984 SPP2Q13103 211 aa23.03■■□□□ 1.28
CLN3-205ENST00000359984 FBXO18Q8NFZ0 1043 aa23.03■■□□□ 1.28
CLN3-205ENST00000359984 RIOX1Q9H6W3 641 aa23.03■■□□□ 1.28
CLN3-205ENST00000359984 AS3MTQ9HBK9 375 aa23.03■■□□□ 1.28
CLN3-205ENST00000359984 CSADQ9Y600 493 aa23.03■■□□□ 1.28
CLN3-205ENST00000359984 ZHX2Q9Y6X8 837 aa23.03■■□□□ 1.28
CLN3-205ENST00000359984 BAZ2BQ9UIF8 2168 aaKnown RBP23.03■■□□□ 1.28
CLN3-205ENST00000359984 SLC16A2P36021 539 aa23.02■■□□□ 1.28
CLN3-205ENST00000359984 ZNF280CQ8ND82 737 aa23.02■■□□□ 1.28
CLN3-205ENST00000359984 VAT1LQ9HCJ6 419 aa23.02■■□□□ 1.28
CLN3-205ENST00000359984 RBM27Q9P2N5 1060 aaKnown RBP23.02■■□□□ 1.28
CLN3-205ENST00000359984 PAPPA2Q9BXP8 1791 aa23.02■■□□□ 1.28
CLN3-205ENST00000359984 USP17L10C9JJH3 530 aa23.02■■□□□ 1.28
CLN3-205ENST00000359984 ARMC9Q7Z3E5 817 aa23.02■■□□□ 1.28
CLN3-205ENST00000359984 ZNF408Q9H9D4 720 aa23.02■■□□□ 1.28
CLN3-205ENST00000359984 MTMR2Q13614 643 aa23.01■■□□□ 1.27
CLN3-205ENST00000359984 PFKFB3Q16875 520 aaPredicted RBP23.01■■□□□ 1.27
CLN3-205ENST00000359984 ANKRD13AQ8IZ07 590 aa23.01■■□□□ 1.27
CLN3-205ENST00000359984 SCG2P13521 617 aa23■■□□□ 1.27
CLN3-205ENST00000359984 FAM83BQ5T0W9 1011 aa23■■□□□ 1.27
CLN3-205ENST00000359984 ADGRF4Q8IZF3 695 aa23■■□□□ 1.27
CLN3-205ENST00000359984 RGS22Q8NE09 1264 aa23■■□□□ 1.27
CLN3-205ENST00000359984 CLMNQ96JQ2 1002 aa23■■□□□ 1.27
CLN3-205ENST00000359984 ZBTB4Q9P1Z0 1013 aaPredicted RBP23■■□□□ 1.27
CLN3-205ENST00000359984 AFG3L2Q9Y4W6 797 aa23■■□□□ 1.27
CLN3-205ENST00000359984 OTOFQ9HC10 1997 aa23■■□□□ 1.27
CLN3-205ENST00000359984 TRIM75PA6NK02 468 aa23■■□□□ 1.27
CLN3-205ENST00000359984 TMEM232C9JQI7 657 aa23■■□□□ 1.27
CLN3-205ENST00000359984 F13A1P00488 732 aa23■■□□□ 1.27
CLN3-205ENST00000359984 BACE1P56817 501 aa23■■□□□ 1.27
CLN3-205ENST00000359984 KRT40Q6A162 431 aa23■■□□□ 1.27
CLN3-205ENST00000359984 CHADLQ6NUI6 762 aa23■■□□□ 1.27
CLN3-205ENST00000359984 SHISA4Q96DD7 197 aa23■■□□□ 1.27
CLN3-205ENST00000359984 RRP36Q96EU6 259 aaKnown RBP23■■□□□ 1.27
CLN3-205ENST00000359984 PIGSQ96S52 555 aa23■■□□□ 1.27
CLN3-205ENST00000359984 JMJD4Q9H9V9 463 aa23■■□□□ 1.27
CLN3-205ENST00000359984 EMILIN3Q9NT22 766 aa23■■□□□ 1.27
CLN3-205ENST00000359984 DGKZQ13574 1117 aa22.99■■□□□ 1.27
CLN3-205ENST00000359984 BTNL9Q6UXG8 535 aa22.99■■□□□ 1.27
CLN3-205ENST00000359984 FERMT3Q86UX7 667 aa22.99■■□□□ 1.27
CLN3-205ENST00000359984 HOMER1Q86YM7 354 aa22.99■■□□□ 1.27
CLN3-205ENST00000359984 LPAR1Q92633 364 aa22.99■■□□□ 1.27
CLN3-205ENST00000359984 ELP3Q9H9T3 547 aa22.99■■□□□ 1.27
CLN3-205ENST00000359984 USP14P54578 494 aa22.98■■□□□ 1.27
CLN3-205ENST00000359984 TRIM29Q14134 588 aa22.98■■□□□ 1.27
CLN3-205ENST00000359984 LDLRAD1Q5T700 205 aa22.98■■□□□ 1.27
CLN3-205ENST00000359984 CNKSR2Q8WXI2 1034 aa22.98■■□□□ 1.27
CLN3-205ENST00000359984 VPS54Q9P1Q0 977 aa22.98■■□□□ 1.27
CLN3-205ENST00000359984 PHIPQ8WWQ0 1821 aa22.98■■□□□ 1.27
CLN3-205ENST00000359984 MYH6P13533 1939 aa22.98■■□□□ 1.27
CLN3-205ENST00000359984 MTMR8Q96EF0 704 aa22.98■■□□□ 1.27
CLN3-205ENST00000359984 KCNJ14Q9UNX9 436 aa22.98■■□□□ 1.27
CLN3-205ENST00000359984 ITGBL1O95965 494 aaPredicted RBP22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms