RNA–Protein interactions for RNA: ENST00000347401.7

COL6A3-202, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-202ENST00000347401 MAP3K5Q99683 1374 aa14.59□□□□□ -0.07
COL6A3-202ENST00000347401 BIRC3Q13489 604 aa14.59□□□□□ -0.07
COL6A3-202ENST00000347401 PLCB4Q15147 1175 aa14.59□□□□□ -0.07
COL6A3-202ENST00000347401 PDZD8Q8NEN9 1154 aa14.59□□□□□ -0.07
COL6A3-202ENST00000347401 CREB3O43889 395 aa14.59□□□□□ -0.07
COL6A3-202ENST00000347401 EEF1GP26641 437 aaKnown RBP14.59□□□□□ -0.07
COL6A3-202ENST00000347401 CFAP61Q8NHU2 1237 aa14.59□□□□□ -0.07
COL6A3-202ENST00000347401 MEIS3Q99687 375 aa14.59□□□□□ -0.07
COL6A3-202ENST00000347401 STX17P56962 302 aa14.59□□□□□ -0.07
COL6A3-202ENST00000347401 DISP3Q9P2K9 1392 aa14.58□□□□□ -0.07
COL6A3-202ENST00000347401 GJC1P36383 396 aa14.58□□□□□ -0.07
COL6A3-202ENST00000347401 SAAL1Q96ER3 474 aa14.58□□□□□ -0.07
COL6A3-202ENST00000347401 YY1AP1Q9H869 796 aa14.58□□□□□ -0.07
COL6A3-202ENST00000347401 MIS18AQ9NYP9 233 aa14.58□□□□□ -0.07
COL6A3-202ENST00000347401 DNM3Q9UQ16 869 aa14.58□□□□□ -0.07
COL6A3-202ENST00000347401 RIMS2Q9UQ26 1411 aa14.58□□□□□ -0.07
COL6A3-202ENST00000347401 CCNT1O60563 726 aaKnown RBP14.58□□□□□ -0.07
COL6A3-202ENST00000347401 APOEP02649 317 aa14.58□□□□□ -0.07
COL6A3-202ENST00000347401 CCDC92Q53HC0 331 aaPredicted RBP14.58□□□□□ -0.07
COL6A3-202ENST00000347401 PPP2R2CQ9Y2T4 447 aa14.58□□□□□ -0.07
COL6A3-202ENST00000347401 PACSIN2Q9UNF0 486 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-202ENST00000347401 ZNF189O75820 626 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-202ENST00000347401 PEX19P40855 299 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 TRIM6Q9C030 488 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-202ENST00000347401 TRPC6Q9Y210 931 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 ARHGAP10A1A4S6 786 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 PBKQ96KB5 322 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 VPS16Q9H269 839 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 A0A1B0GW55 424 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 DUX4L2P0CJ85 424 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 DUX4L3P0CJ86 424 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 DUX4L4P0CJ87 422 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 DUX4L5P0CJ88 424 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 DUX4L6P0CJ89 424 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 DUX4L7P0CJ90 424 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 BPIFB4P59827 614 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 PSMD6Q15008 389 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 ICE2Q659A1 982 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 DUX4Q9UBX2 424 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 NOC2LQ9Y3T9 749 aaKnown RBP14.58□□□□□ -0.08
COL6A3-202ENST00000347401 PCYT1AP49585 367 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 ZNF274Q96GC6 653 aaPredicted RBP14.58□□□□□ -0.08
COL6A3-202ENST00000347401 SH3GL3Q99963 347 aa14.58□□□□□ -0.08
COL6A3-202ENST00000347401 C2CD5Q86YS7 1000 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 N4BP2L2Q92802 583 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-202ENST00000347401 CALCRLQ16602 461 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 IKBKBO14920 756 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 RASA3Q14644 834 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 PAWRQ96IZ0 340 aaKnown RBP14.57□□□□□ -0.08
COL6A3-202ENST00000347401 THUMPD2Q9BTF0 503 aaKnown RBP14.57□□□□□ -0.08
COL6A3-202ENST00000347401 CARD10Q9BWT7 1032 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 MYH8P13535 1937 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 TTC38Q5R3I4 469 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 RINT1Q6NUQ1 792 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.57□□□□□ -0.08
COL6A3-202ENST00000347401 HOOK2Q96ED9 719 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 SPC25Q9HBM1 224 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 MAST3O60307 1309 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 POLR2BP30876 1174 aaKnown RBP14.57□□□□□ -0.08
COL6A3-202ENST00000347401 MTX1Q13505 466 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 LONRF2Q1L5Z9 754 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 CASC4Q6P4E1 433 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 MICAL3Q7RTP6 2002 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 BRD1O95696 1058 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 KCNA4P22459 653 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 HADHQ16836 314 aaKnown RBP14.57□□□□□ -0.08
COL6A3-202ENST00000347401 MMEL1Q495T6 779 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 BATF3Q9NR55 127 aa14.57□□□□□ -0.08
COL6A3-202ENST00000347401 SGSM2O43147 1006 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 TTC6Q86TZ1 520 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 KCNJ18B7U540 433 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 KCNJ12Q14500 433 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 NBPF20Q3BBV1 942 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 A0A1W2PQ27 194 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 A0A1W2PQ64 194 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 A0A1W2PQD8 194 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 CATSPER1Q8NEC5 780 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 XPO4Q9C0E2 1151 aaKnown RBP14.56□□□□□ -0.08
COL6A3-202ENST00000347401 VIRMAQ69YN4 1812 aaKnown RBP14.56□□□□□ -0.08
COL6A3-202ENST00000347401 E9PMD0 336 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 LIG3P49916 1009 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 ADCY2Q08462 1091 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 AKAP4Q5JQC9 854 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 TMCO5AQ8N6Q1 288 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 C14orf93Q9H972 538 aaKnown RBP14.56□□□□□ -0.08
COL6A3-202ENST00000347401 NDE1Q9NXR1 346 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 CFAP73A6NFT4 308 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 MAPK13O15264 365 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 RAP1GDS1P52306 607 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 SEMA3FQ13275 785 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 NONOQ15233 471 aaKnown RBP eCLIP14.56□□□□□ -0.08
COL6A3-202ENST00000347401 AOC3Q16853 763 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 DENND2AQ9ULE3 1009 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 URB2Q14146 1524 aaKnown RBP14.56□□□□□ -0.08
COL6A3-202ENST00000347401 PTCD1O75127 700 aaKnown RBP14.56□□□□□ -0.08
COL6A3-202ENST00000347401 KRT39Q6A163 491 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 HACE1Q8IYU2 909 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 PBRM1Q86U86 1689 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 DIXDC1Q155Q3 683 aa14.56□□□□□ -0.08
COL6A3-202ENST00000347401 TEDDM1Q5T9Z0 273 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms