RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 SNW1Q13573 536 aaKnown RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 GLE1Q53GS7 698 aaKnown RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 DCTPP1Q9H773 170 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 LMBRD1Q9NUN5 540 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 SEPT10Q9P0V9 454 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 KNDC1Q76NI1 1749 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 ANKRD42Q8N9B4 389 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 USP54Q70EL1 1684 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 DOCK11Q5JSL3 2073 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 MAPK10P53779 464 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 DHX9Q08211 1270 aaKnown RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 CCDC40Q4G0X9 1142 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 L2HGDHQ9H9P8 463 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 POLE3Q9NRF9 147 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 OTUD6AQ7L8S5 288 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 TUBB6Q9BUF5 446 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 G3V3G9 751 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 DCAF8Q5TAQ9 597 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 CTNNAL1Q9UBT7 734 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 PDHA1P08559 390 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 KCTD21Q4G0X4 260 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 LIN7AO14910 233 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 DNAJC8O75937 253 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 GCKP35557 465 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 MPRIPQ6WCQ1 1025 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 TRIML1Q8N9V2 468 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 SELENOSQ9BQE4 189 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 CBX8Q9HC52 389 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 CHD3Q12873 2000 aaKnown RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 SNAP23O00161 211 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 ABCF3Q9NUQ8 709 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 TUBA8Q9NY65 449 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 STAP2Q9UGK3 403 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 TAF1P21675 1872 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 DESP17661 470 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 ZNF668Q96K58 619 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 CALCAP01258 141 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 SFPQP23246 707 aaKnown RBP eCLIP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 ASIC2Q16515 512 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 NGDNQ8NEJ9 315 aaKnown RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 STK10O94804 968 aaKnown RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 MAP2K1Q02750 393 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 LRRCC1Q9C099 1032 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 MIS12Q9H081 205 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 TMEM232C9JQI7 657 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 FBXO2Q9UK22 296 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 GNL1P36915 607 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 ATP6V1E2Q96A05 226 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 PHF3Q92576 2039 aaKnown RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 TRAPPC10P48553 1259 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 OSBPL5Q9H0X9 879 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 MACROD2A1Z1Q3 448 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 AP5Z1O43299 807 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 CYP2C19P33261 490 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 TIMM10P62072 90 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 CCDC33Q8N5R6 958 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 ZNF692Q9BU19 519 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 DLEC1Q9Y238 1755 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 RWDD2BP57060 319 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 SIRT1Q96EB6 747 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 L3MBTL3Q96JM7 780 aaPredicted RBP3.93□□□□□ -1.78
SYNE1-201ENST00000341594 PHACTR3Q96KR7 559 aa3.93□□□□□ -1.78
SYNE1-201ENST00000341594 PLB1Q6P1J6 1458 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 POTEFA5A3E0 1075 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 POTEIP0CG38 1075 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 POTEJP0CG39 1038 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 POTEEQ6S8J3 1075 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 ALDH16A1Q8IZ83 802 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 HDAC6Q9UBN7 1215 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 ARHGAP4P98171 946 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 NEDD9Q14511 834 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 GJA10Q969M2 543 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 TSR3Q9UJK0 312 aaKnown RBP3.92□□□□□ -1.78
SYNE1-201ENST00000341594 C1orf228Q6PIY5 440 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 CCSER2Q9H7U1 834 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 HECW2Q9P2P5 1572 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 TMEM131LA2VDJ0 1609 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 RBM5P52756 815 aaKnown RBP eCLIP3.92□□□□□ -1.78
SYNE1-201ENST00000341594 ZNF215Q9UL58 517 aaPredicted RBP3.92□□□□□ -1.78
SYNE1-201ENST00000341594 MYO1FO00160 1098 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 LRRC41Q15345 812 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 SUPT20HQ8NEM7 779 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 SAP30BPQ9UHR5 308 aaKnown RBP3.92□□□□□ -1.78
SYNE1-201ENST00000341594 FAN1Q9Y2M0 1017 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 CRYBG1Q9Y4K1 1723 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 SPDYCQ5MJ68 293 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 OLFM4Q6UX06 510 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 HIPK4Q8NE63 616 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 HDAC7Q8WUI4 952 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 KIF1AQ12756 1690 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 SLCO1A2P46721 670 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 CEP85LQ5SZL2 805 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 DDX27Q96GQ7 796 aaKnown RBP3.92□□□□□ -1.78
SYNE1-201ENST00000341594 HPS4Q9NQG7 708 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 POLR3EQ9NVU0 708 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 CEP126Q9P2H0 1117 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 ADAMTS12P58397 1594 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 ATICP31939 592 aa3.92□□□□□ -1.78
SYNE1-201ENST00000341594 FAM53CQ9NYF3 392 aa3.92□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms