RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 EHMT1Q9H9B1 1298 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 DNAJC17Q9NVM6 304 aaKnown RBP9.61□□□□□ -0.87
RTN3-202ENST00000339997 JRKLQ9Y4A0 524 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 MROH1Q8NDA8 1641 aa9.61□□□□□ -0.87
RTN3-202ENST00000339997 GNAT2P19087 354 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 RPUSD2Q8IZ73 545 aaKnown RBP9.6□□□□□ -0.87
RTN3-202ENST00000339997 ZNF654Q8IZM8 581 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 FBXO18Q8NFZ0 1043 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 CCDC110Q8TBZ0 833 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 EPB41L5Q9HCM4 733 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 ABCB6Q9NP58 842 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 CDC23Q9UJX2 597 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 CHD1O14646 1710 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 KIF22Q14807 665 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 CLUL1Q15846 466 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 FAM133BQ5BKY9 247 aaKnown RBP9.6□□□□□ -0.87
RTN3-202ENST00000339997 SSH3Q8TE77 659 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 FNBP1Q96RU3 617 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 ORAI2Q96SN7 254 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 RNF17Q9BXT8 1623 aaKnown RBP9.6□□□□□ -0.87
RTN3-202ENST00000339997 GOLGB1Q14789 3259 aaKnown RBP9.6□□□□□ -0.87
RTN3-202ENST00000339997 ARHGAP42A6NI28 874 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 HMGB1P1B2RPK0 211 aaPredicted RBP9.6□□□□□ -0.87
RTN3-202ENST00000339997 PPP2R5AQ15172 486 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 CCDC144BQ3MJ40 725 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 SRGAP1Q7Z6B7 1085 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 PHLDB2Q86SQ0 1253 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 RPAINQ86UA6 219 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.6□□□□□ -0.87
RTN3-202ENST00000339997 SYMPKQ92797 1274 aaKnown RBP9.6□□□□□ -0.87
RTN3-202ENST00000339997 TM6SF1Q9BZW5 370 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 MRPL44Q9H9J2 332 aaKnown RBP9.6□□□□□ -0.87
RTN3-202ENST00000339997 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.6□□□□□ -0.87
RTN3-202ENST00000339997 KIAA0586Q9BVV6 1533 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 MYO1CO00159 1063 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 FTCDO95954 541 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 CD19P15391 556 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 KCNA6P17658 529 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 CMA1P23946 247 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 CYP4A11Q02928 519 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 TTLL7Q6ZT98 887 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 DNAJC10Q8IXB1 793 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 TDRD7Q8NHU6 1098 aaKnown RBP9.6□□□□□ -0.87
RTN3-202ENST00000339997 STAG1Q8WVM7 1258 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 MYCBPQ99417 103 aaPredicted RBP9.6□□□□□ -0.87
RTN3-202ENST00000339997 LBHD1Q9BQE6 289 aaPredicted RBP9.6□□□□□ -0.87
RTN3-202ENST00000339997 CSRNP2Q9H175 543 aa9.6□□□□□ -0.87
RTN3-202ENST00000339997 CFBP00751 764 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 TRIM14Q14142 442 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 MUM1Q2TAK8 710 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 TGFBRAP1Q8WUH2 860 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 MAK16Q9BXY0 300 aaKnown RBP9.59□□□□□ -0.87
RTN3-202ENST00000339997 SWAP70Q9UH65 585 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 TBK1Q9UHD2 729 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 ABCC4O15439 1325 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 CIB2O75838 187 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 ADORA1P30542 326 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 RNF10Q8N5U6 811 aaKnown RBP9.59□□□□□ -0.87
RTN3-202ENST00000339997 GJA10Q969M2 543 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 KIFC2Q96AC6 838 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 EPSTI1Q96J88 318 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 ADAM21Q9UKJ8 722 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 NPATQ14207 1427 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 GYG1P46976 350 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 ERFP50548 548 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 MRPL12P52815 198 aaKnown RBP9.59□□□□□ -0.87
RTN3-202ENST00000339997 NONOQ15233 471 aaKnown RBP eCLIP9.59□□□□□ -0.87
RTN3-202ENST00000339997 KMT5BQ4FZB7 885 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 DCUN1D2Q6PH85 259 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 USP37Q86T82 979 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 TPH2Q8IWU9 490 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 RABGGTAQ92696 567 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 FERMT1Q9BQL6 677 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 DBNLQ9UJU6 430 aaKnown RBP9.59□□□□□ -0.87
RTN3-202ENST00000339997 ATP8A1Q9Y2Q0 1164 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 GAS8O95995 478 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 MYCLP12524 364 aaPredicted RBP9.59□□□□□ -0.87
RTN3-202ENST00000339997 BCAMP50895 628 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 CALCRLQ16602 461 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 RASIP1Q5U651 963 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 CCDC127Q96BQ5 260 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 PGBD1Q96JS3 809 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 SLC24A3Q9HC58 644 aa9.59□□□□□ -0.87
RTN3-202ENST00000339997 HIP1RO75146 1068 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 EIF4A1P60842 406 aaKnown RBP9.58□□□□□ -0.88
RTN3-202ENST00000339997 GSTO1P78417 241 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 WHAMMP3Q1A5X7 153 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 TSNAXIP1Q2TAA8 658 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 NBPF14Q5TI25 921 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 FYB2Q5VWT5 728 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 DCLK2Q8N568 766 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 SMCR8Q8TEV9 937 aaPredicted RBP9.58□□□□□ -0.88
RTN3-202ENST00000339997 IRX2Q9BZI1 471 aaPredicted RBP9.58□□□□□ -0.88
RTN3-202ENST00000339997 TMEM232C9JQI7 657 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 PFKFB2O60825 505 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 GIGYF1O75420 1035 aaPredicted RBP9.58□□□□□ -0.88
RTN3-202ENST00000339997 FLOT1O75955 427 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 ATP2A2P16615 1042 aaKnown RBP9.58□□□□□ -0.88
RTN3-202ENST00000339997 ATP5JP18859 108 aa9.58□□□□□ -0.88
RTN3-202ENST00000339997 KAZNQ674X7 775 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms