RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 TBC1D10BQ4KMP7 808 aaPredicted RBP13.42□□□□□ -0.26
USP1-201ENST00000339950 TXNRD3Q86VQ6 643 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 TEX11Q8IYF3 940 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 COA7Q96BR5 231 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 BCCIPQ9P287 314 aaKnown RBP eCLIP13.42□□□□□ -0.26
USP1-201ENST00000339950 ST5P78524 1137 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 CCDC70Q6NSX1 233 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 CCDC148Q8NFR7 591 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 IFT81Q8WYA0 676 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 BMP2KQ9NSY1 1161 aaPredicted RBP13.42□□□□□ -0.26
USP1-201ENST00000339950 FBXO2Q9UK22 296 aaPredicted RBP13.42□□□□□ -0.26
USP1-201ENST00000339950 BUB1O43683 1085 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 SCG2P13521 617 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 NOP2P46087 812 aaKnown RBP13.42□□□□□ -0.26
USP1-201ENST00000339950 PLCD1P51178 756 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 RAD9BQ6WBX8 426 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 NYAP1Q6ZVC0 841 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 PTF1AQ7RTS3 328 aa13.42□□□□□ -0.26
USP1-201ENST00000339950 SRBD1Q8N5C6 995 aaKnown RBP13.42□□□□□ -0.26
USP1-201ENST00000339950 NOC4LQ9BVI4 516 aaKnown RBP13.42□□□□□ -0.26
USP1-201ENST00000339950 A0A087X0B3 334 aa13.41□□□□□ -0.26
USP1-201ENST00000339950 UFL1O94874 794 aa13.41□□□□□ -0.26
USP1-201ENST00000339950 TERF2Q15554 542 aa13.41□□□□□ -0.26
USP1-201ENST00000339950 CCDC42Q96M95 316 aa13.41□□□□□ -0.26
USP1-201ENST00000339950 OSBPL5Q9H0X9 879 aaPredicted RBP13.41□□□□□ -0.26
USP1-201ENST00000339950 CACNB3P54284 484 aa13.41□□□□□ -0.26
USP1-201ENST00000339950 ITPK1Q13572 414 aa13.41□□□□□ -0.26
USP1-201ENST00000339950 KRT31Q15323 416 aa13.41□□□□□ -0.26
USP1-201ENST00000339950 UTP14CQ5TAP6 766 aaKnown RBP13.41□□□□□ -0.26
USP1-201ENST00000339950 MARCH10Q8NA82 808 aaPredicted RBP13.41□□□□□ -0.26
USP1-201ENST00000339950 SMCR8Q8TEV9 937 aaPredicted RBP13.41□□□□□ -0.26
USP1-201ENST00000339950 TACC3Q9Y6A5 838 aa13.41□□□□□ -0.26
USP1-201ENST00000339950 NRXN3Q9Y4C0 1643 aa13.41□□□□□ -0.26
USP1-201ENST00000339950 ATP2C2O75185 946 aa13.41□□□□□ -0.26
USP1-201ENST00000339950 CSF1RP07333 972 aa13.41□□□□□ -0.26
USP1-201ENST00000339950 NCAPD2Q15021 1401 aa13.41□□□□□ -0.26
USP1-201ENST00000339950 PSDA5PKW4 1024 aaPredicted RBP13.4□□□□□ -0.26
USP1-201ENST00000339950 IKBKBO14920 756 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 LIFRP42702 1097 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 GABPB1Q06547 395 aaPredicted RBP13.4□□□□□ -0.26
USP1-201ENST00000339950 PRPF4BQ13523 1007 aaKnown RBP13.4□□□□□ -0.26
USP1-201ENST00000339950 SPATA1Q5VX52 437 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 TPTE2Q6XPS3 522 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 MAEAQ7L5Y9 396 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 KRT26Q7Z3Y9 468 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 SMARCAL1Q9NZC9 954 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 RTL9Q8NET4 1388 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 IL6STP40189 918 aaPredicted RBP13.4□□□□□ -0.26
USP1-201ENST00000339950 KLK7P49862 253 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 SYCP1Q15431 976 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 ZYXQ15942 572 aaKnown RBP13.4□□□□□ -0.26
USP1-201ENST00000339950 NTRK3Q16288 839 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 C2CD5Q86YS7 1000 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 BLIDQ8IZY5 108 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 PPP1R1BQ9UD71 204 aaPredicted RBP13.4□□□□□ -0.26
USP1-201ENST00000339950 SRPRBQ9Y5M8 271 aaKnown RBP13.4□□□□□ -0.26
USP1-201ENST00000339950 KLRF2D3W0D1 207 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 HLTFQ14527 1009 aaKnown RBP eCLIP13.4□□□□□ -0.269e-6■□□□□ 9.4
USP1-201ENST00000339950 CTR9Q6PD62 1173 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 PROCA1Q8NCQ7 364 aaPredicted RBP13.4□□□□□ -0.26
USP1-201ENST00000339950 MINPP1Q9UNW1 487 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 MON2Q7Z3U7 1717 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 CPDO75976 1380 aa13.4□□□□□ -0.26
USP1-201ENST00000339950 SMCO2A6NFE2 343 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 TMCO5BA8MYB1 307 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 RPN1P04843 607 aaKnown RBP13.39□□□□□ -0.27
USP1-201ENST00000339950 COPB1P53618 953 aaKnown RBP13.39□□□□□ -0.27
USP1-201ENST00000339950 DOK7Q18PE1 504 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 TC2NQ8N9U0 490 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 CALML4Q96GE6 196 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 PIK3C2AO00443 1686 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 BAG3O95817 575 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 SLFN14P0C7P3 912 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 ZNF76P36508 570 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 GTF2A1P52655 376 aaPredicted RBP13.39□□□□□ -0.27
USP1-201ENST00000339950 LONRF2Q1L5Z9 754 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 TBC1D9BQ66K14 1250 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 CNGA4Q8IV77 575 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 KSR1Q8IVT5 923 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 NAPGQ99747 312 aaPredicted RBP13.39□□□□□ -0.27
USP1-201ENST00000339950 CCNL1Q9UK58 526 aaPredicted RBP13.39□□□□□ -0.27
USP1-201ENST00000339950 TRAF5O00463 557 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 PRCPP42785 496 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 SLC7A5Q01650 507 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 RIN2Q8WYP3 895 aaPredicted RBP13.39□□□□□ -0.27
USP1-201ENST00000339950 SMARCC1Q92922 1105 aaPredicted RBP13.39□□□□□ -0.27
USP1-201ENST00000339950 FOXP1Q9H334 677 aaPredicted RBP13.39□□□□□ -0.27
USP1-201ENST00000339950 ZEB2O60315 1214 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 EIF3JO75822 258 aaKnown RBP13.39□□□□□ -0.27
USP1-201ENST00000339950 GTF2IP78347 998 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 SH3RF3Q8TEJ3 882 aaPredicted RBP13.39□□□□□ -0.27
USP1-201ENST00000339950 FAM84BQ96KN1 310 aaPredicted RBP13.39□□□□□ -0.27
USP1-201ENST00000339950 ACBD3Q9H3P7 528 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 TMEM260Q9NX78 707 aa13.39□□□□□ -0.27
USP1-201ENST00000339950 USP8P40818 1118 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 IRX3P78415 501 aaPredicted RBP13.38□□□□□ -0.27
USP1-201ENST00000339950 USH1GQ495M9 461 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 RRAGAQ7L523 313 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 FCHSD1Q86WN1 690 aa13.38□□□□□ -0.27
USP1-201ENST00000339950 CTAGE1Q96RT6 745 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms