RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.65□□□□□ -1.83
CSMD3-202ENST00000339701 DPP7Q9UHL4 492 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 MST1RQ04912 1400 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 TOGARAM1Q9Y4F4 1720 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 BLOC1S2Q6QNY1 142 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 ARRDC4Q8NCT1 418 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 STMN2Q93045 179 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 DTNBP1Q96EV8 351 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 SPAG5Q96R06 1193 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 AZI2Q9H6S1 392 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 ADAMTS8Q9UP79 889 aa3.65□□□□□ -1.83
CSMD3-202ENST00000339701 GIPC1O14908 333 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 EFCAB14O75071 495 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 ELF1P32519 619 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 ATP11AP98196 1134 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 SFSWAPQ12872 951 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 MCTP1Q6DN14 999 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 CIAPIN1Q6FI81 312 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 HAUS1Q96CS2 278 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 NEK1Q96PY6 1258 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 HOMER3Q9NSC5 361 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 SAMD15Q9P1V8 674 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 MYO3BQ8WXR4 1341 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 SPDYE3A6NKU9 549 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 IDH1O75874 414 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 ATP2B1P20020 1258 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 PRKAR2BP31323 418 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 FCGRTP55899 365 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 CEBPZQ03701 1054 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 PICALMQ13492 652 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 TTC30AQ86WT1 665 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 PDCD7Q8N8D1 485 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 ST13P5Q8NFI4 369 aaPredicted RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 CACTINQ8WUQ7 758 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 PAGR1Q9BTK6 254 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 EPC1Q9H2F5 836 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 PPCSQ9HAB8 311 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 TXNDC16Q9P2K2 825 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 PCDHB9Q9Y5E1 797 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 KIF1CO43896 1103 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 MYL1P05976 194 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 ZSCAN20P17040 1043 aaPredicted RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 TMOD1P28289 359 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 AMPD2Q01433 879 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 KRR1Q13601 381 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 LDHAL6AQ6ZMR3 332 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 KRT26Q7Z3Y9 468 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 KIAA0825Q8IV33 1275 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 ADD3Q9UEY8 706 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 PCP11498 1178 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 HSPA6P17066 643 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 TMPOP42166 694 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 IGBP1P78318 339 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 ASPHQ12797 758 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 NOGQ13253 232 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 CCDC26Q8TAB7 109 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 SKA1Q96BD8 255 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 MAGEF1Q9HAY2 307 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 H0YCG3 227 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 MAP3K13O43283 966 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 LDHBP07195 334 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 HUNKP57058 714 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 RAB11FIP4Q86YS3 637 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 CCDC51Q96ER9 411 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 JAKMIP1Q96N16 626 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 PARVBQ9HBI1 364 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 STX6O43752 255 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 HSF2BPO75031 334 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 UFL1O94874 794 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 RAB3GAP1Q15042 981 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 TRMT44Q8IYL2 757 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 TBC1D5Q92609 795 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 MID2Q9UJV3 735 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 MAST2Q6P0Q8 1798 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 NPR1P16066 1061 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 BRPF1P55201 1214 aaPredicted RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 NOP14P78316 857 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 KIF23Q02241 960 aaPredicted RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 KCTD2Q14681 263 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 STX1AQ16623 288 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 HELBQ8NG08 1087 aaPredicted RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 CFAP36Q96G28 342 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 NDE1Q9NXR1 346 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 BZW2Q9Y6E2 419 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 SNAPC5O75971 98 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 GNAT2P19087 354 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 PRIM1P49642 420 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 INHBEP58166 350 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 TTC6Q86TZ1 520 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 GTF3C2Q8WUA4 911 aaPredicted RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 ANO2Q9NQ90 1003 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 ELL2O00472 640 aaPredicted RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 TSPY3P0CV98 308 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 TSPY8P0CW00 308 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 KPNA2P52292 529 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 DGKZQ13574 1117 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 BMP2KLQ5H9B9 411 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 SYCE1Q8N0S2 351 aa3.64□□□□□ -1.83
CSMD3-202ENST00000339701 THOC1Q96FV9 657 aaKnown RBP3.64□□□□□ -1.83
CSMD3-202ENST00000339701 DCAF5Q96JK2 942 aa3.64□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms