RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 TPD52L1Q16890 204 aaPredicted RBP12.36□□□□□ -0.43
RTN3-201ENST00000338850 NT5DC1Q5TFE4 455 aa12.36□□□□□ -0.43
RTN3-201ENST00000338850 CEP135Q66GS9 1140 aa12.36□□□□□ -0.43
RTN3-201ENST00000338850 FOXP1Q9H334 677 aaPredicted RBP12.36□□□□□ -0.43
RTN3-201ENST00000338850 RNF41Q9H4P4 317 aaPredicted RBP12.36□□□□□ -0.43
RTN3-201ENST00000338850 L2HGDHQ9H9P8 463 aa12.36□□□□□ -0.43
RTN3-201ENST00000338850 PIH1D3Q9NQM4 214 aaKnown RBP12.36□□□□□ -0.43
RTN3-201ENST00000338850 JAG2Q9Y219 1238 aa12.36□□□□□ -0.43
RTN3-201ENST00000338850 MROH7-TTC4A0A0A0MT08 1334 aa12.36□□□□□ -0.43
RTN3-201ENST00000338850 PDS5AQ29RF7 1337 aaKnown RBP12.36□□□□□ -0.43
RTN3-201ENST00000338850 A0A1B0GVL5 298 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 SPDYE2BA6NHP3 402 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 CCDC85CA6NKD9 419 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 SPDYE6P0CI01 402 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 GYG1P46976 350 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 HAND2P61296 217 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 FAM193AP78312 1265 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 MYL5Q02045 173 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 NCBP1Q09161 790 aaKnown RBP12.35□□□□□ -0.43
RTN3-201ENST00000338850 TRIM29Q14134 588 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 PTPN14Q15678 1187 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 DPCR1Q3MIW9 517 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 CFAP100Q494V2 611 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 TPRNQ4KMQ1 711 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 RILPL1Q5EBL4 403 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 AKNAD1Q5T1N1 836 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 CYB5R4Q7L1T6 521 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 ERO1AQ96HE7 468 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 FAM84BQ96KN1 310 aaPredicted RBP12.35□□□□□ -0.43
RTN3-201ENST00000338850 DEFB129Q9H1M3 183 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 ANAPC4Q9UJX5 808 aa12.35□□□□□ -0.43
RTN3-201ENST00000338850 GOLGA8AA7E2F4 631 aa12.34□□□□□ -0.43
RTN3-201ENST00000338850 BMP15O95972 392 aa12.34□□□□□ -0.43
RTN3-201ENST00000338850 SFPQP23246 707 aaKnown RBP eCLIP12.34□□□□□ -0.43
RTN3-201ENST00000338850 HIBADHP31937 336 aaKnown RBP12.34□□□□□ -0.43
RTN3-201ENST00000338850 GUCY1B3Q02153 619 aa12.34□□□□□ -0.43
RTN3-201ENST00000338850 PRKG1Q13976 671 aa12.34□□□□□ -0.43
RTN3-201ENST00000338850 SART3Q15020 963 aaKnown RBP12.34□□□□□ -0.43
RTN3-201ENST00000338850 LDLRAD1Q5T700 205 aa12.34□□□□□ -0.43
RTN3-201ENST00000338850 KANK3Q6NY19 840 aa12.34□□□□□ -0.43
RTN3-201ENST00000338850 CHST3Q7LGC8 479 aa12.34□□□□□ -0.43
RTN3-201ENST00000338850 ARMC9Q7Z3E5 817 aa12.34□□□□□ -0.43
RTN3-201ENST00000338850 IFNL3Q8IZI9 196 aa12.34□□□□□ -0.43
RTN3-201ENST00000338850 SPATA5Q8NB90 893 aa12.34□□□□□ -0.43
RTN3-201ENST00000338850 KIF18AQ8NI77 898 aa12.34□□□□□ -0.43
RTN3-201ENST00000338850 PRMT6Q96LA8 375 aaPredicted RBP12.34□□□□□ -0.43
RTN3-201ENST00000338850 C16orf45Q96MC5 204 aaPredicted RBP12.34□□□□□ -0.43
RTN3-201ENST00000338850 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.34□□□□□ -0.43
RTN3-201ENST00000338850 NACAP1Q9BZK3 213 aa12.34□□□□□ -0.43
RTN3-201ENST00000338850 GPHNQ9NQX3 736 aaPredicted RBP12.34□□□□□ -0.43
RTN3-201ENST00000338850 FAM217BQ9NTX9 383 aaPredicted RBP12.34□□□□□ -0.43
RTN3-201ENST00000338850 DACH1Q9UI36 760 aa12.34□□□□□ -0.43
RTN3-201ENST00000338850 NAP1L2Q9ULW6 460 aaPredicted RBP12.34□□□□□ -0.43
RTN3-201ENST00000338850 SSC5DA1L4H1 1573 aa12.34□□□□□ -0.43
RTN3-201ENST00000338850 CLRN2A0PK11 232 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 GOLGA6L9A6NEM1 432 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 WDHD1O75717 1129 aaPredicted RBP12.33□□□□□ -0.44
RTN3-201ENST00000338850 DEXIO95424 95 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 MMP1P03956 469 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 PHKA1P46020 1223 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 SSRP1Q08945 709 aaKnown RBP12.33□□□□□ -0.44
RTN3-201ENST00000338850 SAFBQ15424 915 aaKnown RBP eCLIP12.33□□□□□ -0.44
RTN3-201ENST00000338850 MFSD14BQ5SR56 506 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 KRBA2Q6ZNG9 492 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 CREBRFQ8IUR6 639 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 TRIM22Q8IYM9 498 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 KRI1Q8N9T8 703 aaKnown RBP12.33□□□□□ -0.44
RTN3-201ENST00000338850 CCDC34Q96HJ3 373 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 SRRTQ9BXP5 876 aaKnown RBP12.33□□□□□ -0.44
RTN3-201ENST00000338850 GTPBP4Q9BZE4 634 aaKnown RBP12.33□□□□□ -0.44
RTN3-201ENST00000338850 NAPBQ9H115 298 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 EPB41L4AQ9HCS5 686 aaPredicted RBP12.33□□□□□ -0.44
RTN3-201ENST00000338850 FZD1Q9UP38 647 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 CEP131Q9UPN4 1083 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 PPP2R3BQ9Y5P8 575 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 PHLPP2Q6ZVD8 1323 aa12.33□□□□□ -0.44
RTN3-201ENST00000338850 RANBP6O60518 1105 aaKnown RBP12.32□□□□□ -0.44
RTN3-201ENST00000338850 POLR3DP05423 398 aaPredicted RBP12.32□□□□□ -0.44
RTN3-201ENST00000338850 PTPREP23469 700 aa12.32□□□□□ -0.44
RTN3-201ENST00000338850 CDC27P30260 824 aa12.32□□□□□ -0.44
RTN3-201ENST00000338850 TM4SF4P48230 202 aa12.32□□□□□ -0.44
RTN3-201ENST00000338850 TMEM67Q5HYA8 995 aa12.32□□□□□ -0.44
RTN3-201ENST00000338850 SHC4Q6S5L8 630 aa12.32□□□□□ -0.44
RTN3-201ENST00000338850 FBXO33Q7Z6M2 555 aa12.32□□□□□ -0.44
RTN3-201ENST00000338850 NOSTRINQ8IVI9 506 aa12.32□□□□□ -0.44
RTN3-201ENST00000338850 RNF26Q9BY78 433 aaPredicted RBP12.32□□□□□ -0.44
RTN3-201ENST00000338850 XPO4Q9C0E2 1151 aaKnown RBP12.32□□□□□ -0.44
RTN3-201ENST00000338850 HSD3B7Q9H2F3 369 aa12.32□□□□□ -0.44
RTN3-201ENST00000338850 TMX1Q9H3N1 280 aa12.32□□□□□ -0.44
RTN3-201ENST00000338850 SLC12A7Q9Y666 1083 aa12.32□□□□□ -0.44
RTN3-201ENST00000338850 GSG1L2A8MUP6 293 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 B4E1Z4 1266 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 IDH1O75874 414 aaKnown RBP12.31□□□□□ -0.44
RTN3-201ENST00000338850 FGRP09769 529 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 RGS19P49795 217 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 RBM5P52756 815 aaKnown RBP eCLIP12.31□□□□□ -0.44
RTN3-201ENST00000338850 FOSBP53539 338 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 FANCCQ00597 558 aa12.31□□□□□ -0.44
RTN3-201ENST00000338850 MKRN3Q13064 507 aaKnown RBP12.31□□□□□ -0.44
RTN3-201ENST00000338850 SPRYD7Q5W111 196 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms