RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 MED23Q9ULK4 1368 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 VAV2P52735 878 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 RASEFQ8IZ41 740 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 PRPF6O94906 941 aaKnown RBP11.29□□□□□ -0.6
CHD3-201ENST00000330494 NDUFA8P51970 172 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 TNNC1P63316 161 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 PPP2R5CQ13362 524 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 MIGA2Q7L4E1 593 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 SPATA24Q86W54 205 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 FBXO11Q86XK2 927 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 SREK1Q8WXA9 508 aaKnown RBP11.29□□□□□ -0.6
CHD3-201ENST00000330494 PIGBQ92521 554 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 XPO4Q9C0E2 1151 aaKnown RBP11.29□□□□□ -0.6
CHD3-201ENST00000330494 SLC39A2Q9NP94 309 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 CERS3Q8IU89 383 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 ERCC6L2Q5T890 1561 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 ERCC5P28715 1186 aaPredicted RBP11.29□□□□□ -0.6
CHD3-201ENST00000330494 PDIA3P30101 505 aaKnown RBP11.29□□□□□ -0.6
CHD3-201ENST00000330494 ABCB5Q2M3G0 1257 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 ZNF274Q96GC6 653 aaPredicted RBP11.29□□□□□ -0.6
CHD3-201ENST00000330494 LSG1Q9H089 658 aaKnown RBP11.29□□□□□ -0.6
CHD3-201ENST00000330494 PANK4Q9NVE7 773 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 CTTNBP2NLQ9P2B4 639 aa11.29□□□□□ -0.6
CHD3-201ENST00000330494 NDC80O14777 642 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 BRDTQ58F21 947 aaPredicted RBP11.28□□□□□ -0.6
CHD3-201ENST00000330494 CHURC1Q8WUH1 139 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 RASSF4Q9H2L5 321 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 SUGCTQ9HAC7 445 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 TRPC5Q9UL62 973 aaPredicted RBP11.28□□□□□ -0.6
CHD3-201ENST00000330494 ABCB4P21439 1286 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 HINFPQ9BQA5 517 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 SCG2P13521 617 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 PSMC4P43686 418 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 KLHL30Q0D2K2 578 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 IFRD2Q12894 506 aaPredicted RBP11.28□□□□□ -0.6
CHD3-201ENST00000330494 CFAP58Q5T655 872 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 CCDC160A6NGH7 325 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 SNAP23O00161 211 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 RIOK3O14730 519 aaKnown RBP11.28□□□□□ -0.6
CHD3-201ENST00000330494 DNM2P50570 870 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 CALCOCO2Q13137 446 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 PTGDRQ13258 359 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 SLC9C1Q4G0N8 1177 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 CDAN1Q8IWY9 1227 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 ANKRD35Q8N283 1001 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 DYNLL2Q96FJ2 89 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 CSRNP1Q96S65 589 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 MTRF1LQ9UGC7 380 aaKnown RBP11.28□□□□□ -0.6
CHD3-201ENST00000330494 CCPG1Q9ULG6 757 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 CEP104O60308 925 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 MYCP01106 439 aaPredicted RBP11.28□□□□□ -0.6
CHD3-201ENST00000330494 USP17L8P0C7I0 530 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 XKR9Q5GH70 373 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 SLFN13Q68D06 897 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 DCUN1D2Q6PH85 259 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 SESTD1Q86VW0 696 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 SYNE4Q8N205 404 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 DCPSQ96C86 337 aaKnown RBP11.28□□□□□ -0.6
CHD3-201ENST00000330494 PUS7LQ9H0K6 701 aaKnown RBP11.28□□□□□ -0.6
CHD3-201ENST00000330494 IGSF1Q8N6C5 1336 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 KIF24Q5T7B8 1368 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.28□□□□□ -0.6
CHD3-201ENST00000330494 HLFQ16534 295 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 LCORLQ8N3X6 602 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 GLT8D2Q9H1C3 349 aa11.28□□□□□ -0.6
CHD3-201ENST00000330494 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.28□□□□□ -0.6
CHD3-201ENST00000330494 POLR2MP0CAP2 368 aa11.27□□□□□ -0.6
CHD3-201ENST00000330494 SLC8A3P57103 927 aa11.27□□□□□ -0.6
CHD3-201ENST00000330494 NLRP10Q86W26 655 aa11.27□□□□□ -0.6
CHD3-201ENST00000330494 DDX12PQ92771 950 aa11.27□□□□□ -0.6
CHD3-201ENST00000330494 GDAP1L1Q96MZ0 367 aa11.27□□□□□ -0.6
CHD3-201ENST00000330494 DESI2Q9BSY9 194 aa11.27□□□□□ -0.6
CHD3-201ENST00000330494 NACA2Q9H009 215 aa11.27□□□□□ -0.6
CHD3-201ENST00000330494 CCDC6Q16204 474 aa11.27□□□□□ -0.6
CHD3-201ENST00000330494 NSRP1Q9H0G5 558 aaKnown RBP11.27□□□□□ -0.6
CHD3-201ENST00000330494 ST7Q9NRC1 585 aa11.27□□□□□ -0.6
CHD3-201ENST00000330494 PFKFB2O60825 505 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 MORC3Q14149 939 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 CPLX4Q7Z7G2 160 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 SECISBP2LQ93073 1101 aaKnown RBP11.27□□□□□ -0.61
CHD3-201ENST00000330494 FTOQ9C0B1 505 aaKnown RBP eCLIP11.27□□□□□ -0.61
CHD3-201ENST00000330494 MTMR6Q9Y217 621 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 CD2BP2O95400 341 aaKnown RBP11.27□□□□□ -0.61
CHD3-201ENST00000330494 LIN9Q5TKA1 542 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 CCDC26Q8TAB7 109 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 DEPTORQ8TB45 409 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 SYMPKQ92797 1274 aaKnown RBP11.27□□□□□ -0.61
CHD3-201ENST00000330494 SPATA31E1Q6ZUB1 1445 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 XDHP47989 1333 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 K7ENM7 598 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 DLATP10515 647 aaKnown RBP11.27□□□□□ -0.61
CHD3-201ENST00000330494 VWA3BQ502W6 1294 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 SFMBT2Q5VUG0 894 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 C8orf74Q6P047 294 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 ADAT2Q7Z6V5 191 aaKnown RBP11.27□□□□□ -0.61
CHD3-201ENST00000330494 DAAM2Q86T65 1068 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 ATP7BP35670 1465 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 BRD1O95696 1058 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 ABL1P00519 1130 aa11.27□□□□□ -0.61
CHD3-201ENST00000330494 RXRBP28702 533 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms