RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 CRNKL1Q9BZJ0 848 aaKnown RBP18.28■□□□□ 0.52
USHBP1-202ENST00000324554 LAMB1P07942 1786 aa18.28■□□□□ 0.52
USHBP1-202ENST00000324554 ZSCAN12O43309 604 aa18.27■□□□□ 0.52
USHBP1-202ENST00000324554 CRY2Q49AN0 593 aa18.27■□□□□ 0.52
USHBP1-202ENST00000324554 FAM47AQ5JRC9 791 aa18.27■□□□□ 0.52
USHBP1-202ENST00000324554 ZNF771Q7L3S4 317 aaPredicted RBP18.27■□□□□ 0.52
USHBP1-202ENST00000324554 CTCFLQ8NI51 663 aaPredicted RBP18.27■□□□□ 0.52
USHBP1-202ENST00000324554 MMP10P09238 476 aa18.27■□□□□ 0.51
USHBP1-202ENST00000324554 AFMP43652 599 aa18.27■□□□□ 0.51
USHBP1-202ENST00000324554 TERF2Q15554 542 aa18.27■□□□□ 0.51
USHBP1-202ENST00000324554 ZNF174Q15697 407 aa18.27■□□□□ 0.51
USHBP1-202ENST00000324554 TTC38Q5R3I4 469 aa18.27■□□□□ 0.51
USHBP1-202ENST00000324554 PAGE5Q96GU1 130 aa18.27■□□□□ 0.51
USHBP1-202ENST00000324554 CCDC34Q96HJ3 373 aa18.27■□□□□ 0.51
USHBP1-202ENST00000324554 WDR24Q96S15 920 aa18.27■□□□□ 0.51
USHBP1-202ENST00000324554 CARD6Q9BX69 1037 aa18.27■□□□□ 0.51
USHBP1-202ENST00000324554 ATP8A2Q9NTI2 1148 aa18.27■□□□□ 0.51
USHBP1-202ENST00000324554 FHOD1Q9Y613 1164 aa18.27■□□□□ 0.51
USHBP1-202ENST00000324554 TADA3O75528 432 aa18.26■□□□□ 0.51
USHBP1-202ENST00000324554 CYP2D6P10635 497 aa18.26■□□□□ 0.51
USHBP1-202ENST00000324554 RBM17Q96I25 401 aaKnown RBP18.26■□□□□ 0.51
USHBP1-202ENST00000324554 ARPP21Q9UBL0 812 aaPredicted RBP18.26■□□□□ 0.51
USHBP1-202ENST00000324554 STX10O60499 249 aa18.25■□□□□ 0.51
USHBP1-202ENST00000324554 UBXN4Q92575 508 aa18.25■□□□□ 0.51
USHBP1-202ENST00000324554 KIAA1551Q9HCM1 1747 aa18.25■□□□□ 0.51
USHBP1-202ENST00000324554 UFL1O94874 794 aa18.25■□□□□ 0.51
USHBP1-202ENST00000324554 CASP1P29466 404 aa18.25■□□□□ 0.51
USHBP1-202ENST00000324554 ATP2C1P98194 919 aaPredicted RBP18.25■□□□□ 0.51
USHBP1-202ENST00000324554 DPYDQ12882 1025 aa18.25■□□□□ 0.51
USHBP1-202ENST00000324554 SCG2P13521 617 aa18.24■□□□□ 0.51
USHBP1-202ENST00000324554 PTGDRQ13258 359 aa18.24■□□□□ 0.51
USHBP1-202ENST00000324554 NR1I3Q14994 352 aa18.24■□□□□ 0.51
USHBP1-202ENST00000324554 SBK1Q52WX2 424 aa18.24■□□□□ 0.51
USHBP1-202ENST00000324554 CT47A1Q5JQC4 288 aaPredicted RBP18.24■□□□□ 0.51
USHBP1-202ENST00000324554 MNS1Q8NEH6 495 aa18.24■□□□□ 0.51
USHBP1-202ENST00000324554 MAST2Q6P0Q8 1798 aa18.24■□□□□ 0.51
USHBP1-202ENST00000324554 A0A1B0GTH6 734 aa18.24■□□□□ 0.51
USHBP1-202ENST00000324554 CD44P16070 742 aaKnown RBP18.24■□□□□ 0.51
USHBP1-202ENST00000324554 CUL4BQ13620 913 aa18.24■□□□□ 0.51
USHBP1-202ENST00000324554 BMS1Q14692 1282 aaKnown RBP18.24■□□□□ 0.51
USHBP1-202ENST00000324554 NLGN1Q8N2Q7 840 aa18.24■□□□□ 0.51
USHBP1-202ENST00000324554 DESI2Q9BSY9 194 aa18.24■□□□□ 0.51
USHBP1-202ENST00000324554 XDHP47989 1333 aa18.24■□□□□ 0.51
USHBP1-202ENST00000324554 BAZ2BQ9UIF8 2168 aaKnown RBP18.24■□□□□ 0.51
USHBP1-202ENST00000324554 GNG11P61952 73 aa18.23■□□□□ 0.51
USHBP1-202ENST00000324554 GRIK5Q16478 980 aa18.23■□□□□ 0.51
USHBP1-202ENST00000324554 SLC4A8Q2Y0W8 1093 aa18.23■□□□□ 0.51
USHBP1-202ENST00000324554 APTXQ7Z2E3 356 aaKnown RBP18.23■□□□□ 0.51
USHBP1-202ENST00000324554 GSDMAQ96QA5 445 aa18.23■□□□□ 0.51
USHBP1-202ENST00000324554 SRRTQ9BXP5 876 aaKnown RBP18.23■□□□□ 0.51
USHBP1-202ENST00000324554 EPC1Q9H2F5 836 aa18.23■□□□□ 0.51
USHBP1-202ENST00000324554 IRS2Q9Y4H2 1338 aa18.23■□□□□ 0.51
USHBP1-202ENST00000324554 TSPY2A6NKD2 308 aa18.23■□□□□ 0.51
USHBP1-202ENST00000324554 TEX33O43247 280 aa18.23■□□□□ 0.51
USHBP1-202ENST00000324554 PNMA6AP0CW24 399 aaPredicted RBP18.23■□□□□ 0.51
USHBP1-202ENST00000324554 VEGFAP15692 232 aaPredicted RBP18.23■□□□□ 0.51
USHBP1-202ENST00000324554 NLRP5P59047 1200 aa18.23■□□□□ 0.51
USHBP1-202ENST00000324554 MTF1Q14872 753 aa18.23■□□□□ 0.51
USHBP1-202ENST00000324554 PFKFB3Q16875 520 aaPredicted RBP18.23■□□□□ 0.51
USHBP1-202ENST00000324554 RCSD1Q6JBY9 416 aa18.23■□□□□ 0.51
USHBP1-202ENST00000324554 PIK3AP1Q6ZUJ8 805 aa18.23■□□□□ 0.51
USHBP1-202ENST00000324554 PDGFDQ9GZP0 370 aaPredicted RBP18.23■□□□□ 0.51
USHBP1-202ENST00000324554 POLLQ9UGP5 575 aa18.23■□□□□ 0.51
USHBP1-202ENST00000324554 SYNRGQ9UMZ2 1314 aa18.22■□□□□ 0.51
USHBP1-202ENST00000324554 EFCAB8A8MWE9 144 aa18.22■□□□□ 0.51
USHBP1-202ENST00000324554 ZRANB2O95218 330 aaKnown RBP eCLIP18.22■□□□□ 0.51
USHBP1-202ENST00000324554 SPATA1Q5VX52 437 aa18.22■□□□□ 0.51
USHBP1-202ENST00000324554 KLHL10Q6JEL2 608 aa18.22■□□□□ 0.51
USHBP1-202ENST00000324554 C6orf229H3BNL8 230 aa18.22■□□□□ 0.51
USHBP1-202ENST00000324554 ADAMTS3O15072 1205 aa18.22■□□□□ 0.51
USHBP1-202ENST00000324554 TRAPPC10P48553 1259 aa18.22■□□□□ 0.51
USHBP1-202ENST00000324554 KIFC2Q96AC6 838 aa18.22■□□□□ 0.51
USHBP1-202ENST00000324554 MCM9Q9NXL9 1143 aa18.22■□□□□ 0.51
USHBP1-202ENST00000324554 CCDC88AQ3V6T2 1871 aa18.22■□□□□ 0.51
USHBP1-202ENST00000324554 RIMBP2O15034 1052 aa18.21■□□□□ 0.51
USHBP1-202ENST00000324554 CASQ1P31415 396 aa18.21■□□□□ 0.51
USHBP1-202ENST00000324554 STX17P56962 302 aa18.21■□□□□ 0.51
USHBP1-202ENST00000324554 MAP3K9P80192 1104 aa18.21■□□□□ 0.51
USHBP1-202ENST00000324554 E2F4Q16254 413 aa18.21■□□□□ 0.51
USHBP1-202ENST00000324554 SMYD4Q8IYR2 804 aaPredicted RBP18.21■□□□□ 0.51
USHBP1-202ENST00000324554 LEMD3Q9Y2U8 911 aa18.21■□□□□ 0.51
USHBP1-202ENST00000324554 PPP1R3GB7ZBB8 358 aa18.21■□□□□ 0.51
USHBP1-202ENST00000324554 USP17L8P0C7I0 530 aa18.21■□□□□ 0.51
USHBP1-202ENST00000324554 TMED8Q6PL24 325 aaPredicted RBP18.21■□□□□ 0.51
USHBP1-202ENST00000324554 MRPL44Q9H9J2 332 aaKnown RBP18.21■□□□□ 0.51
USHBP1-202ENST00000324554 GOLGA6L9A6NEM1 432 aa18.2■□□□□ 0.5
USHBP1-202ENST00000324554 KIF5BP33176 963 aa18.2■□□□□ 0.5
USHBP1-202ENST00000324554 PLA2G4AP47712 749 aa18.2■□□□□ 0.5
USHBP1-202ENST00000324554 KARSQ15046 597 aaKnown RBP18.2■□□□□ 0.5
USHBP1-202ENST00000324554 IL17AQ16552 155 aa18.2■□□□□ 0.5
USHBP1-202ENST00000324554 CDKAL1Q5VV42 579 aa18.2■□□□□ 0.5
USHBP1-202ENST00000324554 DZIP1Q86YF9 867 aaKnown RBP18.2■□□□□ 0.5
USHBP1-202ENST00000324554 ZNF219Q9P2Y4 722 aaPredicted RBP18.2■□□□□ 0.5
USHBP1-202ENST00000324554 GGA1Q9UJY5 639 aa18.2■□□□□ 0.5
USHBP1-202ENST00000324554 MRFAP1Q9Y605 127 aa18.2■□□□□ 0.5
USHBP1-202ENST00000324554 SOWAHDA6NJG2 315 aa18.2■□□□□ 0.5
USHBP1-202ENST00000324554 MCM7P33993 719 aa18.2■□□□□ 0.5
USHBP1-202ENST00000324554 DEFB132Q7Z7B7 95 aa18.2■□□□□ 0.5
USHBP1-202ENST00000324554 STAMQ92783 540 aa18.2■□□□□ 0.5
USHBP1-202ENST00000324554 IRX2Q9BZI1 471 aaPredicted RBP18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms