RNA–Protein interactions for RNA: ENST00000292729.12

USP41-201, Transcript of ubiquitin specific peptidase 41, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene USP41, Length 920 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP41-201ENST00000292729 MSRAQ9UJ68 235 aa12.69□□□□□ -0.38
USP41-201ENST00000292729 TBX21Q9UL17 535 aa12.69□□□□□ -0.38
USP41-201ENST00000292729 SYNGAP1Q96PV0 1343 aa12.68□□□□□ -0.38
USP41-201ENST00000292729 A0A1W2PRG0 241 aa12.68□□□□□ -0.38
USP41-201ENST00000292729 ADAMTS4O75173 837 aa12.68□□□□□ -0.38
USP41-201ENST00000292729 PBX2P40425 430 aa12.68□□□□□ -0.38
USP41-201ENST00000292729 ZAP70P43403 619 aa12.68□□□□□ -0.38
USP41-201ENST00000292729 SEPT2Q15019 361 aa12.68□□□□□ -0.38
USP41-201ENST00000292729 AAK1Q2M2I8 961 aa12.68□□□□□ -0.38
USP41-201ENST00000292729 TNNI3KQ59H18 835 aa12.68□□□□□ -0.38
USP41-201ENST00000292729 TMEM240Q5SV17 173 aa12.68□□□□□ -0.38
USP41-201ENST00000292729 ARHGAP45Q92619 1136 aa12.68□□□□□ -0.38
USP41-201ENST00000292729 MMP19Q99542 508 aa12.68□□□□□ -0.38
USP41-201ENST00000292729 DBNDD2Q9BQY9 259 aa12.68□□□□□ -0.38
USP41-201ENST00000292729 MTIF3Q9H2K0 278 aaKnown RBP12.68□□□□□ -0.38
USP41-201ENST00000292729 PIH1D3Q9NQM4 214 aaKnown RBP12.68□□□□□ -0.38
USP41-201ENST00000292729 CXXC1Q9P0U4 656 aaPredicted RBP12.68□□□□□ -0.38
USP41-201ENST00000292729 HCN4Q9Y3Q4 1203 aa12.68□□□□□ -0.38
USP41-201ENST00000292729 FPGT-TNNI3KV9GXZ4 949 aa12.68□□□□□ -0.38
USP41-201ENST00000292729 ELP1O95163 1332 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 FLOT1O75955 427 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 GNAI2P04899 355 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 ZNF865P0CJ78 1059 aaPredicted RBP12.67□□□□□ -0.38
USP41-201ENST00000292729 IGFBP4P22692 258 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 COPB2P35606 906 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 PLCD1P51178 756 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 GABPAQ06546 454 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 ADGRE1Q14246 886 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 KCTD2Q14681 263 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 CCDC85BQ15834 202 aaPredicted RBP12.67□□□□□ -0.38
USP41-201ENST00000292729 C16orf59Q7L2K0 433 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 MSL3Q8N5Y2 521 aaKnown RBP12.67□□□□□ -0.38
USP41-201ENST00000292729 MIGA1Q8NAN2 632 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 GLT1D1Q96MS3 346 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 SH2D4AQ9H788 454 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 SLC28A3Q9HAS3 691 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 CNPY2Q9Y2B0 182 aa12.67□□□□□ -0.38
USP41-201ENST00000292729 SYNRGQ9UMZ2 1314 aa12.66□□□□□ -0.38
USP41-201ENST00000292729 GRXCR1A8MXD5 290 aa12.66□□□□□ -0.38
USP41-201ENST00000292729 MPHOSPH10O00566 681 aaKnown RBP12.66□□□□□ -0.38
USP41-201ENST00000292729 IDH1O75874 414 aaKnown RBP12.66□□□□□ -0.38
USP41-201ENST00000292729 POLR3DP05423 398 aaPredicted RBP12.66□□□□□ -0.38
USP41-201ENST00000292729 ZNF792Q3KQV3 632 aa12.66□□□□□ -0.38
USP41-201ENST00000292729 TMEM179Q6ZVK1 233 aa12.66□□□□□ -0.38
USP41-201ENST00000292729 RIOX2Q8IUF8 465 aa12.66□□□□□ -0.38
USP41-201ENST00000292729 PCSK9Q8NBP7 692 aaKnown RBP12.66□□□□□ -0.38
USP41-201ENST00000292729 KLHDC9Q8NEP7 349 aa12.66□□□□□ -0.38
USP41-201ENST00000292729 ATG4CQ96DT6 458 aa12.66□□□□□ -0.38
USP41-201ENST00000292729 ARHGEF10LQ9HCE6 1279 aa12.66□□□□□ -0.38
USP41-201ENST00000292729 FAM184BQ9ULE4 1060 aa12.66□□□□□ -0.38
USP41-201ENST00000292729 PNMA6EA0A0J9YXQ4 647 aa12.65□□□□□ -0.38
USP41-201ENST00000292729 WDR46O15213 610 aaKnown RBP12.65□□□□□ -0.38
USP41-201ENST00000292729 TLR3O15455 904 aaKnown RBP12.65□□□□□ -0.38
USP41-201ENST00000292729 BMP1P13497 986 aa12.65□□□□□ -0.38
USP41-201ENST00000292729 CSF2RAP15509 400 aa12.65□□□□□ -0.38
USP41-201ENST00000292729 CST5P28325 142 aaPredicted RBP12.65□□□□□ -0.38
USP41-201ENST00000292729 CDK7P50613 346 aa12.65□□□□□ -0.38
USP41-201ENST00000292729 TMEM132BQ14DG7 1078 aa12.65□□□□□ -0.38
USP41-201ENST00000292729 KCNA10Q16322 511 aa12.65□□□□□ -0.38
USP41-201ENST00000292729 CCSAPQ6IQ19 270 aaPredicted RBP12.65□□□□□ -0.38
USP41-201ENST00000292729 ZNF365Q70YC5 407 aa12.65□□□□□ -0.38
USP41-201ENST00000292729 MAGEB6Q8N7X4 407 aa12.65□□□□□ -0.38
USP41-201ENST00000292729 HERVK_113Q902F9 699 aa12.65□□□□□ -0.38
USP41-201ENST00000292729 ADAMTS5Q9UNA0 930 aa12.65□□□□□ -0.38
USP41-201ENST00000292729 TMX2Q9Y320 296 aa12.65□□□□□ -0.38
USP41-201ENST00000292729 DUSP11O75319 330 aaKnown RBP12.64□□□□□ -0.39
USP41-201ENST00000292729 PGK2P07205 417 aa12.64□□□□□ -0.39
USP41-201ENST00000292729 TAL1P17542 331 aaPredicted RBP12.64□□□□□ -0.39
USP41-201ENST00000292729 OS9Q13438 667 aaPredicted RBP12.64□□□□□ -0.39
USP41-201ENST00000292729 TRMT2AQ8IZ69 625 aaKnown RBP12.64□□□□□ -0.39
USP41-201ENST00000292729 VCPKMTQ9H867 229 aa12.64□□□□□ -0.39
USP41-201ENST00000292729 SPC25Q9HBM1 224 aa12.64□□□□□ -0.39
USP41-201ENST00000292729 IL23AQ9NPF7 189 aa12.64□□□□□ -0.39
USP41-201ENST00000292729 SWAP70Q9UH65 585 aa12.64□□□□□ -0.39
USP41-201ENST00000292729 A0A0U1RQG5 324 aaPredicted RBP12.63□□□□□ -0.39
USP41-201ENST00000292729 ARVCFO00192 962 aa12.63□□□□□ -0.39
USP41-201ENST00000292729 APBB1O00213 710 aa12.63□□□□□ -0.39
USP41-201ENST00000292729 FGBP02675 491 aa12.63□□□□□ -0.39
USP41-201ENST00000292729 STAT3P40763 770 aa12.63□□□□□ -0.39
USP41-201ENST00000292729 KIAA1755Q5JYT7 1200 aa12.63□□□□□ -0.39
USP41-201ENST00000292729 CDCA7LQ96GN5 454 aa12.63□□□□□ -0.39
USP41-201ENST00000292729 RIOK1Q9BRS2 568 aaKnown RBP12.63□□□□□ -0.39
USP41-201ENST00000292729 NKX2-4Q9H2Z4 354 aa12.63□□□□□ -0.39
USP41-201ENST00000292729 MCM9Q9NXL9 1143 aa12.63□□□□□ -0.39
USP41-201ENST00000292729 MCM3APO60318 1980 aa12.62□□□□□ -0.39
USP41-201ENST00000292729 ERC2O15083 957 aa12.62□□□□□ -0.39
USP41-201ENST00000292729 ASGR1P07306 291 aa12.62□□□□□ -0.39
USP41-201ENST00000292729 ACRP10323 421 aa12.62□□□□□ -0.39
USP41-201ENST00000292729 MAMDC4Q6UXC1 1216 aa12.62□□□□□ -0.39
USP41-201ENST00000292729 FAM126BQ8IXS8 530 aa12.62□□□□□ -0.39
USP41-201ENST00000292729 SPICE1Q8N0Z3 855 aa12.62□□□□□ -0.39
USP41-201ENST00000292729 VTI1AQ96AJ9 217 aa12.62□□□□□ -0.39
USP41-201ENST00000292729 LENG1Q96BZ8 264 aaPredicted RBP12.62□□□□□ -0.39
USP41-201ENST00000292729 NECAB3Q96P71 396 aaPredicted RBP12.62□□□□□ -0.39
USP41-201ENST00000292729 LRFN3Q9BTN0 628 aa12.62□□□□□ -0.39
USP41-201ENST00000292729 CRNKL1Q9BZJ0 848 aaKnown RBP12.62□□□□□ -0.39
USP41-201ENST00000292729 PPP1R12CQ9BZL4 782 aa12.62□□□□□ -0.39
USP41-201ENST00000292729 DBNLQ9UJU6 430 aaKnown RBP12.62□□□□□ -0.39
USP41-201ENST00000292729 CHD9Q3L8U1 2897 aa12.61□□□□□ -0.39
USP41-201ENST00000292729 MAGEB6P1A0A0J9YX57 407 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 109.9 ms