RNA–Protein interactions for RNA: ENST00000288344.14

HMGN1-201, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 1,303 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-201ENST00000288344 HIP1O00291 1037 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 PEX10O60683 326 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 PRDM1O75626 825 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 APPP05067 770 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 VCAM1P19320 739 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 TDO2P48775 406 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 USP14P54578 494 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 CTDSPL2Q05D32 466 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 FAM110CQ1W6H9 321 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 TMEM132AQ24JP5 1023 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 FBXO46Q6PJ61 603 aaPredicted RBP10.91□□□□□ -0.66
HMGN1-201ENST00000288344 ERO1AQ96HE7 468 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 DDRGK1Q96HY6 314 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 TRIM34Q9BYJ4 488 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 NAPBQ9H115 298 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 VCPKMTQ9H867 229 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 SYNPO2Q9UMS6 1093 aa10.91□□□□□ -0.66
HMGN1-201ENST00000288344 PLXNB2O15031 1838 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 SPDYE16A6NNV3 312 aaPredicted RBP10.9□□□□□ -0.66
HMGN1-201ENST00000288344 USP17L15C9J2P7 530 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 USP17L13C9JLJ4 530 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 USP17L11C9JVI0 530 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 USP17L18D6R9N7 530 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 USP17L22D6RA61 530 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 USP17L17D6RBQ6 530 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 USP17L19D6RCP7 530 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 USP17L20D6RJB6 530 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 SGSM2O43147 1006 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 GNRH1P01148 92 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 IGHA2P01877 340 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 GCLCP48506 637 aaPredicted RBP10.9□□□□□ -0.66
HMGN1-201ENST00000288344 HERVK_113P62684 666 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 USP17L24Q0WX57 530 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 BMP2KLQ5H9B9 411 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 RCSD1Q6JBY9 416 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 CEP95Q96GE4 821 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 TCP11L1Q9NUJ3 509 aa10.9□□□□□ -0.66
HMGN1-201ENST00000288344 KIAA0100Q14667 2235 aaKnown RBP10.9□□□□□ -0.67
HMGN1-201ENST00000288344 RGS19P49795 217 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 TFAP4Q01664 338 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 PTH1RQ03431 593 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 ICA1Q05084 483 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 PABPC4Q13310 644 aaKnown RBP eCLIP10.89□□□□□ -0.673e-18■□□□□ 8
HMGN1-201ENST00000288344 FAM47AQ5JRC9 791 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 TBC1D10CQ8IV04 446 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 AMOTL1Q8IY63 956 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 ANKRD13CQ8N6S4 541 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 REPS2Q8NFH8 660 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 STAG1Q8WVM7 1258 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 LPAR1Q92633 364 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 USP6NLQ92738 828 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 MAP4K1Q92918 833 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 ARMC5Q96C12 935 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 EFCC1Q9HA90 598 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 MKNK2Q9HBH9 465 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 TMOD4Q9NZQ9 345 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 BTBD7Q9P203 1132 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 SRRDQ9UH36 339 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 HPS5Q9UPZ3 1129 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 TRIM17Q9Y577 477 aa10.89□□□□□ -0.67
HMGN1-201ENST00000288344 F5H6K3 240 aa10.88□□□□□ -0.67
HMGN1-201ENST00000288344 MPHOSPH10O00566 681 aaKnown RBP10.88□□□□□ -0.67
HMGN1-201ENST00000288344 NMT2O60551 498 aa10.88□□□□□ -0.67
HMGN1-201ENST00000288344 OSBPP22059 807 aa10.88□□□□□ -0.67
HMGN1-201ENST00000288344 PSMC4P43686 418 aa10.88□□□□□ -0.67
HMGN1-201ENST00000288344 PDE4BQ07343 736 aa10.88□□□□□ -0.67
HMGN1-201ENST00000288344 KLRC3Q07444 240 aa10.88□□□□□ -0.67
HMGN1-201ENST00000288344 COG2Q14746 738 aa10.88□□□□□ -0.67
HMGN1-201ENST00000288344 AKNAD1Q5T1N1 836 aa10.88□□□□□ -0.67
HMGN1-201ENST00000288344 ZNF444Q8N0Y2 327 aaPredicted RBP10.88□□□□□ -0.67
HMGN1-201ENST00000288344 STK11IPQ8N1F8 1099 aa10.88□□□□□ -0.67
HMGN1-201ENST00000288344 ANKS1AQ92625 1134 aa10.88□□□□□ -0.67
HMGN1-201ENST00000288344 RPAP3Q9H6T3 665 aaPredicted RBP10.88□□□□□ -0.67
HMGN1-201ENST00000288344 PNMA3Q9UL41 463 aa10.88□□□□□ -0.67
HMGN1-201ENST00000288344 TAF6LQ9Y6J9 622 aa10.88□□□□□ -0.67
HMGN1-201ENST00000288344 A0A0G2JMZ2 1700 aa10.88□□□□□ -0.67
HMGN1-201ENST00000288344 RAD50Q92878 1312 aa10.88□□□□□ -0.67
HMGN1-201ENST00000288344 PCP11498 1178 aaKnown RBP10.87□□□□□ -0.67
HMGN1-201ENST00000288344 MFAP1P55081 439 aaKnown RBP10.87□□□□□ -0.67
HMGN1-201ENST00000288344 ZYXQ15942 572 aaKnown RBP10.87□□□□□ -0.67
HMGN1-201ENST00000288344 GMCL1P1Q8NEA9 526 aa10.87□□□□□ -0.67
HMGN1-201ENST00000288344 PORCNQ9H237 461 aa10.87□□□□□ -0.67
HMGN1-201ENST00000288344 ZNF287Q9HBT7 754 aa10.87□□□□□ -0.67
HMGN1-201ENST00000288344 DIAPH3Q9NSV4 1193 aa10.87□□□□□ -0.67
HMGN1-201ENST00000288344 HOXC10Q9NYD6 342 aa10.87□□□□□ -0.67
HMGN1-201ENST00000288344 GABRQQ9UN88 632 aa10.87□□□□□ -0.67
HMGN1-201ENST00000288344 RABGAP1Q9Y3P9 1069 aa10.87□□□□□ -0.67
HMGN1-201ENST00000288344 PTCH2Q9Y6C5 1203 aa10.87□□□□□ -0.67
HMGN1-201ENST00000288344 MYH4Q9Y623 1939 aa10.87□□□□□ -0.67
HMGN1-201ENST00000288344 MYPNQ86TC9 1320 aa10.87□□□□□ -0.67
HMGN1-201ENST00000288344 LAMA4Q16363 1823 aa10.87□□□□□ -0.67
HMGN1-201ENST00000288344 WDR46O15213 610 aaKnown RBP10.86□□□□□ -0.67
HMGN1-201ENST00000288344 TTLL1O95922 423 aa10.86□□□□□ -0.67
HMGN1-201ENST00000288344 NDUFB10O96000 172 aa10.86□□□□□ -0.67
HMGN1-201ENST00000288344 CYP21A2P08686 494 aa10.86□□□□□ -0.67
HMGN1-201ENST00000288344 NT5C2P49902 561 aa10.86□□□□□ -0.67
HMGN1-201ENST00000288344 PRMT2P55345 433 aa10.86□□□□□ -0.67
HMGN1-201ENST00000288344 HAND2P61296 217 aa10.86□□□□□ -0.67
HMGN1-201ENST00000288344 ERVK-9P63128 1117 aa10.86□□□□□ -0.67
HMGN1-201ENST00000288344 ERVK-24P63145 666 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms