RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 MMP14P50281 582 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 TNIP1Q15025 636 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 LRRC47Q8N1G4 583 aaKnown RBP17.11■□□□□ 0.33
CCDC47-201ENST00000225726 PANK2Q9BZ23 570 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 CABP5Q9NP86 173 aa17.11■□□□□ 0.33
CCDC47-201ENST00000225726 SNW1Q13573 536 aaKnown RBP17.1■□□□□ 0.33
CCDC47-201ENST00000225726 RASGRP2Q7LDG7 609 aa17.1■□□□□ 0.33
CCDC47-201ENST00000225726 CEP131Q9UPN4 1083 aa17.1■□□□□ 0.33
CCDC47-201ENST00000225726 EIF6P56537 245 aaKnown RBP17.1■□□□□ 0.33
CCDC47-201ENST00000225726 CAMK4Q16566 473 aa17.1■□□□□ 0.33
CCDC47-201ENST00000225726 FKBP1CQ5VVH2 108 aa17.1■□□□□ 0.33
CCDC47-201ENST00000225726 FAM151AQ8WW52 585 aa17.1■□□□□ 0.33
CCDC47-201ENST00000225726 VEGFAP15692 232 aaPredicted RBP17.09■□□□□ 0.33
CCDC47-201ENST00000225726 CMA1P23946 247 aa17.09■□□□□ 0.33
CCDC47-201ENST00000225726 CLEC10AQ8IUN9 316 aa17.09■□□□□ 0.33
CCDC47-201ENST00000225726 CCDC148Q8NFR7 591 aa17.09■□□□□ 0.33
CCDC47-201ENST00000225726 NOL7Q9UMY1 257 aaKnown RBP17.09■□□□□ 0.33
CCDC47-201ENST00000225726 MORC2Q9Y6X9 1032 aaPredicted RBP17.09■□□□□ 0.33
CCDC47-201ENST00000225726 FAM196BA6NMK8 535 aa17.09■□□□□ 0.33
CCDC47-201ENST00000225726 TCP10L2B9ZVM9 353 aa17.09■□□□□ 0.33
CCDC47-201ENST00000225726 CTAGE5O15320 804 aa17.09■□□□□ 0.33
CCDC47-201ENST00000225726 SLURP2P0DP57 97 aa17.09■□□□□ 0.33
CCDC47-201ENST00000225726 MARCKSP29966 332 aaPredicted RBP17.09■□□□□ 0.33
CCDC47-201ENST00000225726 RRP36Q96EU6 259 aaKnown RBP17.09■□□□□ 0.33
CCDC47-201ENST00000225726 ZBED3Q96IU2 234 aaPredicted RBP17.09■□□□□ 0.33
CCDC47-201ENST00000225726 BAZ2BQ9UIF8 2168 aaKnown RBP17.09■□□□□ 0.33
CCDC47-201ENST00000225726 CLRN2A0PK11 232 aa17.09■□□□□ 0.33
CCDC47-201ENST00000225726 CUTAO60888 179 aa17.09■□□□□ 0.33
CCDC47-201ENST00000225726 WWC2Q6AWC2 1192 aa17.09■□□□□ 0.33
CCDC47-201ENST00000225726 FMR1NBQ8N0W7 255 aaPredicted RBP17.09■□□□□ 0.33
CCDC47-201ENST00000225726 GPKOWQ92917 476 aaPredicted RBP eCLIP17.09■□□□□ 0.336e-6■■□□□ 12
CCDC47-201ENST00000225726 CSRNP1Q96S65 589 aa17.09■□□□□ 0.33
CCDC47-201ENST00000225726 BARHL2Q9NY43 387 aa17.09■□□□□ 0.33
CCDC47-201ENST00000225726 NYAP2Q9P242 653 aa17.09■□□□□ 0.33
CCDC47-201ENST00000225726 KINO60870 393 aaKnown RBP17.08■□□□□ 0.33
CCDC47-201ENST00000225726 GALNT17Q6IS24 598 aa17.08■□□□□ 0.33
CCDC47-201ENST00000225726 TMEM179Q6ZVK1 233 aa17.08■□□□□ 0.33
CCDC47-201ENST00000225726 RIOX1Q9H6W3 641 aa17.08■□□□□ 0.33
CCDC47-201ENST00000225726 KANSL2Q9H9L4 492 aa17.08■□□□□ 0.33
CCDC47-201ENST00000225726 HERC5Q9UII4 1024 aaKnown RBP17.08■□□□□ 0.33
CCDC47-201ENST00000225726 STXBP3O00186 592 aa17.08■□□□□ 0.32
CCDC47-201ENST00000225726 CCDC192P0DO97 292 aa17.08■□□□□ 0.32
CCDC47-201ENST00000225726 DAGLBQ8NCG7 672 aa17.08■□□□□ 0.32
CCDC47-201ENST00000225726 MKL1Q969V6 931 aa17.08■□□□□ 0.32
CCDC47-201ENST00000225726 PCDHA4Q9UN74 947 aa17.08■□□□□ 0.32
CCDC47-201ENST00000225726 CNTNAP1P78357 1384 aa17.08■□□□□ 0.32
CCDC47-201ENST00000225726 RPS12P25398 132 aaKnown RBP17.08■□□□□ 0.32
CCDC47-201ENST00000225726 HEATR3Q7Z4Q2 680 aa17.08■□□□□ 0.32
CCDC47-201ENST00000225726 PCDHB6Q9Y5E3 794 aa17.08■□□□□ 0.32
CCDC47-201ENST00000225726 ZNF543Q08ER8 600 aa17.07■□□□□ 0.32
CCDC47-201ENST00000225726 ABCB5Q2M3G0 1257 aa17.07■□□□□ 0.32
CCDC47-201ENST00000225726 EARS2Q5JPH6 523 aaKnown RBP17.07■□□□□ 0.32
CCDC47-201ENST00000225726 BLIDQ8IZY5 108 aa17.07■□□□□ 0.32
CCDC47-201ENST00000225726 SEC63Q9UGP8 760 aaKnown RBP17.07■□□□□ 0.32
CCDC47-201ENST00000225726 FRMPD2Q68DX3 1309 aaPredicted RBP17.07■□□□□ 0.32
CCDC47-201ENST00000225726 A0A1B0GVL5 298 aa17.07■□□□□ 0.32
CCDC47-201ENST00000225726 TRIM75PA6NK02 468 aa17.07■□□□□ 0.32
CCDC47-201ENST00000225726 MYO1BO43795 1136 aa17.07■□□□□ 0.32
CCDC47-201ENST00000225726 NDUFA8P51970 172 aa17.07■□□□□ 0.32
CCDC47-201ENST00000225726 KRI1Q8N9T8 703 aaKnown RBP17.07■□□□□ 0.32
CCDC47-201ENST00000225726 CCDC12Q8WUD4 166 aaPredicted RBP17.07■□□□□ 0.32
CCDC47-201ENST00000225726 FAM205CA6NFA0 338 aa17.06■□□□□ 0.32
CCDC47-201ENST00000225726 BMP15O95972 392 aa17.06■□□□□ 0.32
CCDC47-201ENST00000225726 ATP2B2Q01814 1243 aa17.06■□□□□ 0.32
CCDC47-201ENST00000225726 hCG_1984214I3L0E3 225 aa17.06■□□□□ 0.32
CCDC47-201ENST00000225726 TRAPPC10P48553 1259 aa17.06■□□□□ 0.32
CCDC47-201ENST00000225726 RASSF7Q02833 373 aa17.06■□□□□ 0.32
CCDC47-201ENST00000225726 GPATCH4Q5T3I0 446 aaKnown RBP17.06■□□□□ 0.32
CCDC47-201ENST00000225726 FAM83AQ86UY5 434 aa17.06■□□□□ 0.32
CCDC47-201ENST00000225726 ZNF713Q8N859 430 aaPredicted RBP17.06■□□□□ 0.32
CCDC47-201ENST00000225726 CPVLQ9H3G5 476 aa17.06■□□□□ 0.32
CCDC47-201ENST00000225726 FAM237AA0A1B0GTK4 181 aa17.06■□□□□ 0.32
CCDC47-201ENST00000225726 EEF2P13639 858 aaKnown RBP17.06■□□□□ 0.32
CCDC47-201ENST00000225726 ZNF280AP59817 542 aaPredicted RBP17.06■□□□□ 0.32
CCDC47-201ENST00000225726 RESP18Q5W5W9 173 aa17.06■□□□□ 0.32
CCDC47-201ENST00000225726 CKAP2LQ8IYA6 745 aa17.06■□□□□ 0.32
CCDC47-201ENST00000225726 NLGN2Q8NFZ4 835 aa17.06■□□□□ 0.32
CCDC47-201ENST00000225726 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.06■□□□□ 0.32
CCDC47-201ENST00000225726 MYOZ2Q9NPC6 264 aa17.06■□□□□ 0.32
CCDC47-201ENST00000225726 PFKFB1P16118 471 aa17.05■□□□□ 0.32
CCDC47-201ENST00000225726 RBM26Q5T8P6 1007 aaKnown RBP17.05■□□□□ 0.32
CCDC47-201ENST00000225726 TYW1BQ6NUM6 668 aa17.05■□□□□ 0.32
CCDC47-201ENST00000225726 ANP32BQ92688 251 aaKnown RBP17.05■□□□□ 0.32
CCDC47-201ENST00000225726 VEZTQ9HBM0 779 aa17.05■□□□□ 0.32
CCDC47-201ENST00000225726 ICA1Q05084 483 aa17.05■□□□□ 0.32
CCDC47-201ENST00000225726 SEPT2Q15019 361 aa17.05■□□□□ 0.32
CCDC47-201ENST00000225726 DCAF4Q8WV16 495 aa17.05■□□□□ 0.32
CCDC47-201ENST00000225726 PIGSQ96S52 555 aa17.05■□□□□ 0.32
CCDC47-201ENST00000225726 UBA5Q9GZZ9 404 aa17.05■□□□□ 0.32
CCDC47-201ENST00000225726 FBXO2Q9UK22 296 aaPredicted RBP17.05■□□□□ 0.32
CCDC47-201ENST00000225726 GDF11O95390 407 aa17.05■□□□□ 0.32
CCDC47-201ENST00000225726 PTPREP23469 700 aa17.05■□□□□ 0.32
CCDC47-201ENST00000225726 TYRO3Q06418 890 aa17.05■□□□□ 0.32
CCDC47-201ENST00000225726 SHC4Q6S5L8 630 aa17.05■□□□□ 0.32
CCDC47-201ENST00000225726 GPCPD1Q9NPB8 672 aa17.05■□□□□ 0.32
CCDC47-201ENST00000225726 HPSEQ9Y251 543 aa17.05■□□□□ 0.32
CCDC47-201ENST00000225726 M0R2N6 131 aa17.04■□□□□ 0.32
CCDC47-201ENST00000225726 ATP2B1P20020 1258 aa17.04■□□□□ 0.32
CCDC47-201ENST00000225726 SHROOM1Q2M3G4 852 aaPredicted RBP17.04■□□□□ 0.32
CCDC47-201ENST00000225726 TTC38Q5R3I4 469 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms