RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 SFMBT2Q5VUG0 894 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 EYA1Q99502 592 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 ST7Q9NRC1 585 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 EPN1Q9Y6I3 576 aaPredicted RBP11.5□□□□□ -0.57
VCL-201ENST00000211998 GSPT1P15170 499 aaKnown RBP11.5□□□□□ -0.57
VCL-201ENST00000211998 RBM6P78332 1123 aaKnown RBP11.5□□□□□ -0.57
VCL-201ENST00000211998 PHEXP78562 749 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 CNNM4Q6P4Q7 775 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 PPP1R21Q6ZMI0 780 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 C11orf57Q6ZUT1 292 aaPredicted RBP11.5□□□□□ -0.57
VCL-201ENST00000211998 SCYL3Q8IZE3 742 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 VPS37BQ9H9H4 285 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 FAM207AQ9NSI2 230 aaPredicted RBP11.5□□□□□ -0.57
VCL-201ENST00000211998 SERTAD1Q9UHV2 236 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 PPM1FP49593 454 aaPredicted RBP11.5□□□□□ -0.57
VCL-201ENST00000211998 PLCD1P51178 756 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 FAM167BQ9BTA0 163 aa11.5□□□□□ -0.57
VCL-201ENST00000211998 SATB1Q01826 763 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 PSMD2Q13200 908 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 NBPF9Q3BBW0 867 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 USP28Q96RU2 1077 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 CD2APQ9Y5K6 639 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 CTTNBP2Q8WZ74 1663 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 TFCP2L1Q9NZI6 479 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 CTTNBP2NLQ9P2B4 639 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 TRAPPC8Q9Y2L5 1435 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 A0A1W2PP64 1363 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 PDCLQ13371 301 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 CWF19L2Q2TBE0 894 aaKnown RBP11.49□□□□□ -0.57
VCL-201ENST00000211998 KRT12Q99456 494 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 MYO1AQ9UBC5 1043 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 PALD1Q9ULE6 856 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 TBX22Q9Y458 520 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 KCNJ18B7U540 433 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 MGEA5O60502 916 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 KCNJ12Q14500 433 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 PARP9Q8IXQ6 854 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 CEP70Q8NHQ1 597 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 PDLIM2Q96JY6 352 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 EIF4G3O43432 1585 aaKnown RBP11.49□□□□□ -0.57
VCL-201ENST00000211998 RPL13P26373 211 aaKnown RBP11.49□□□□□ -0.57
VCL-201ENST00000211998 ITIH3Q06033 890 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 C2orf54Q08AI8 447 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 ALS2CLQ60I27 953 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 EPB41L5Q9HCM4 733 aa11.49□□□□□ -0.57
VCL-201ENST00000211998 GEMIN8Q9NWZ8 242 aaKnown RBP11.49□□□□□ -0.57
VCL-201ENST00000211998 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.49□□□□□ -0.57
VCL-201ENST00000211998 PARP1P09874 1014 aaKnown RBP11.48□□□□□ -0.57
VCL-201ENST00000211998 PLBD2Q8NHP8 589 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 STAMQ92783 540 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 FAM227BQ96M60 508 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 SCINQ9Y6U3 715 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 PDHA1P08559 390 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 ELF1P32519 619 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 PTPN21Q16825 1174 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 CCDC84Q86UT8 332 aaPredicted RBP11.48□□□□□ -0.57
VCL-201ENST00000211998 BLZF1Q9H2G9 400 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 EIF4E1BA6NMX2 242 aaKnown RBP11.48□□□□□ -0.57
VCL-201ENST00000211998 MYO1EQ12965 1108 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 DIS3L2Q8IYB7 885 aaKnown RBP11.48□□□□□ -0.57
VCL-201ENST00000211998 ST13P4Q8IZP2 240 aaPredicted RBP11.48□□□□□ -0.57
VCL-201ENST00000211998 PDCD7Q8N8D1 485 aaKnown RBP11.48□□□□□ -0.57
VCL-201ENST00000211998 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.48□□□□□ -0.57
VCL-201ENST00000211998 LRRC8CQ8TDW0 803 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 TXLNGQ9NUQ3 528 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 AMFRQ9UKV5 643 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 KIAA0556O60303 1618 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 MAST3O60307 1309 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 AOX1Q06278 1338 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 UHRF1BP1Q6BDS2 1440 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 ENO4A6NNW6 628 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 ECM2O94769 699 aaPredicted RBP11.48□□□□□ -0.57
VCL-201ENST00000211998 MIGA1Q8NAN2 632 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 NLRC4Q9NPP4 1024 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 KLC4Q9NSK0 619 aa11.48□□□□□ -0.57
VCL-201ENST00000211998 hCG_2014768A0A024R1R8 64 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 HEXIM1O94992 359 aaKnown RBP11.47□□□□□ -0.57
VCL-201ENST00000211998 EPB41P11171 864 aaKnown RBP11.47□□□□□ -0.57
VCL-201ENST00000211998 CASP14P31944 242 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 CCDC14Q49A88 953 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 P3H4Q92791 437 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 GLT8D2Q9H1C3 349 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 PTPRKQ15262 1439 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 NDUFA8P51970 172 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 ARID5BQ14865 1188 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 TRAPPC3LQ5T215 181 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 TMEM87BQ96K49 555 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 PTPROQ16827 1216 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 ZNF827Q17R98 1081 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 TM6SF1Q9BZW5 370 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 AGTPBP1Q9UPW5 1226 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 KRT24Q2M2I5 525 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 LGSNQ5TDP6 509 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 IQCDQ96DY2 449 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 ZKSCAN3Q9BRR0 538 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 CLEC11AQ9Y240 323 aa11.47□□□□□ -0.57
VCL-201ENST00000211998 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.47□□□□□ -0.57
VCL-201ENST00000211998 EYA2O00167 538 aa11.46□□□□□ -0.57
VCL-201ENST00000211998 MORC3Q14149 939 aa11.46□□□□□ -0.57
VCL-201ENST00000211998 MYSM1Q5VVJ2 828 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms