RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 RBM5P52756 815 aaKnown RBP eCLIP16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 CFAP100Q494V2 611 aa16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 TTC38Q5R3I4 469 aa16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 WWC2Q6AWC2 1192 aa16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 ZNF713Q8N859 430 aaPredicted RBP16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 UPF1Q92900 1129 aaKnown RBP eCLIP16.39■□□□□ 0.214e-8■■■■■ 28.3
RTFDC1-201ENST00000023939 DNAJC18Q9H819 358 aa16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 FAM13BQ9NYF5 915 aa16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 USP25Q9UHP3 1055 aa16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 PCDHAC2Q9Y5I4 1007 aa16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 TYW1BQ6NUM6 668 aa16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 TATDN1Q6P1N9 297 aa16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 USP17L2Q6R6M4 530 aa16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 SH3BP5LQ7L8J4 393 aa16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 CCDC12Q8WUD4 166 aaPredicted RBP16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 RRP36Q96EU6 259 aaKnown RBP16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 DNAJC25Q9H1X3 360 aa16.39■□□□□ 0.21
RTFDC1-201ENST00000023939 ESYT2A0FGR8 921 aa16.38■□□□□ 0.21
RTFDC1-201ENST00000023939 DDTLA6NHG4 134 aaPredicted RBP16.38■□□□□ 0.21
RTFDC1-201ENST00000023939 USP17L5A8MUK1 530 aa16.38■□□□□ 0.21
RTFDC1-201ENST00000023939 GOLGA8HP0CJ92 632 aa16.38■□□□□ 0.21
RTFDC1-201ENST00000023939 ATP2C1P98194 919 aaPredicted RBP16.38■□□□□ 0.21
RTFDC1-201ENST00000023939 IQCB1Q15051 598 aa16.38■□□□□ 0.21
RTFDC1-201ENST00000023939 LARGE2Q8N3Y3 721 aa16.38■□□□□ 0.21
RTFDC1-201ENST00000023939 GPKOWQ92917 476 aaPredicted RBP eCLIP16.38■□□□□ 0.218e-6■■□□□ 13.6
RTFDC1-201ENST00000023939 MKL1Q969V6 931 aa16.38■□□□□ 0.21
RTFDC1-201ENST00000023939 ZMYND12Q9H0C1 365 aa16.38■□□□□ 0.21
RTFDC1-201ENST00000023939 PIM2Q9P1W9 311 aa16.38■□□□□ 0.21
RTFDC1-201ENST00000023939 TUBE1Q9UJT0 475 aa16.38■□□□□ 0.21
RTFDC1-201ENST00000023939 ADCY5O95622 1261 aa16.37■□□□□ 0.21
RTFDC1-201ENST00000023939 KRBA2Q6ZNG9 492 aa16.37■□□□□ 0.21
RTFDC1-201ENST00000023939 LUZP1Q86V48 1076 aa16.37■□□□□ 0.21
RTFDC1-201ENST00000023939 PIBF1Q8WXW3 757 aa16.37■□□□□ 0.21
RTFDC1-201ENST00000023939 PRMT6Q96LA8 375 aaPredicted RBP16.37■□□□□ 0.21
RTFDC1-201ENST00000023939 MTFR1LQ9H019 292 aa16.37■□□□□ 0.21
RTFDC1-201ENST00000023939 CLIP2Q9UDT6 1046 aa16.37■□□□□ 0.21
RTFDC1-201ENST00000023939 CCDC39Q9UFE4 941 aa16.37■□□□□ 0.21
RTFDC1-201ENST00000023939 COL4A5P29400 1685 aa16.37■□□□□ 0.21
RTFDC1-201ENST00000023939 ESPNB1AK53 854 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 CACNB3P54284 484 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 ZNF543Q08ER8 600 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 NOM1Q5C9Z4 860 aaKnown RBP16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 PIK3AP1Q6ZUJ8 805 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 HEATR3Q7Z4Q2 680 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 CEP57L1Q8IYX8 460 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 BPIFA3Q9BQP9 254 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 NAT10Q9H0A0 1025 aaKnown RBP16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 TDRD3Q9H7E2 651 aaKnown RBP16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 ZNF277Q9NRM2 450 aaPredicted RBP16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 NYAP2Q9P242 653 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 HDAC9Q9UKV0 1011 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 ZNRF3Q9ULT6 936 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 SPDYE2BA6NHP3 402 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 PSMD14O00487 310 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 SPDYE6P0CI01 402 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 ATP2B1P20020 1258 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 GRIN1Q05586 938 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 TCP10Q12799 353 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 GPATCH4Q5T3I0 446 aaKnown RBP16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 C11orf57Q6ZUT1 292 aaPredicted RBP16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 LRRC47Q8N1G4 583 aaKnown RBP16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 MTMR14Q8NCE2 650 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 AGBL3Q8NEM8 1001 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 KANSL2Q9H9L4 492 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 SEC63Q9UGP8 760 aaKnown RBP16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 PCDHA6Q9UN73 950 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 PCDHA8Q9Y5H6 950 aa16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 BAZ2BQ9UIF8 2168 aaKnown RBP16.36■□□□□ 0.21
RTFDC1-201ENST00000023939 WNT7AO00755 349 aa16.35■□□□□ 0.21
RTFDC1-201ENST00000023939 ADAMTS3O15072 1205 aa16.35■□□□□ 0.21
RTFDC1-201ENST00000023939 POLD1P28340 1107 aa16.35■□□□□ 0.21
RTFDC1-201ENST00000023939 GNA11P29992 359 aa16.35■□□□□ 0.21
RTFDC1-201ENST00000023939 NLRP12P59046 1061 aa16.35■□□□□ 0.21
RTFDC1-201ENST00000023939 LONRF3Q496Y0 759 aa16.35■□□□□ 0.21
RTFDC1-201ENST00000023939 CERKLQ49MI3 558 aaPredicted RBP16.35■□□□□ 0.21
RTFDC1-201ENST00000023939 FKBP1CQ5VVH2 108 aa16.35■□□□□ 0.21
RTFDC1-201ENST00000023939 ARL6IP4Q66PJ3 421 aaKnown RBP16.35■□□□□ 0.21
RTFDC1-201ENST00000023939 RASGRP2Q7LDG7 609 aa16.35■□□□□ 0.21
RTFDC1-201ENST00000023939 ZSCAN30Q86W11 494 aa16.35■□□□□ 0.21
RTFDC1-201ENST00000023939 CSRNP2Q9H175 543 aa16.35■□□□□ 0.21
RTFDC1-201ENST00000023939 HOOK1Q9UJC3 728 aaKnown RBP16.35■□□□□ 0.21
RTFDC1-201ENST00000023939 MTMR7Q9Y216 660 aa16.35■□□□□ 0.21
RTFDC1-201ENST00000023939 AP5Z1O43299 807 aa16.34■□□□□ 0.21
RTFDC1-201ENST00000023939 MMP14P50281 582 aa16.34■□□□□ 0.21
RTFDC1-201ENST00000023939 MDM2Q00987 491 aaPredicted RBP16.34■□□□□ 0.21
RTFDC1-201ENST00000023939 ZNF174Q15697 407 aa16.34■□□□□ 0.21
RTFDC1-201ENST00000023939 KANK3Q6NY19 840 aa16.34■□□□□ 0.21
RTFDC1-201ENST00000023939 TMEM179Q6ZVK1 233 aa16.34■□□□□ 0.21
RTFDC1-201ENST00000023939 ZSCAN29Q8IWY8 852 aaPredicted RBP16.34■□□□□ 0.21
RTFDC1-201ENST00000023939 NIM1KQ8IY84 436 aa16.34■□□□□ 0.21
RTFDC1-201ENST00000023939 CNNM3Q8NE01 707 aa16.34■□□□□ 0.21
RTFDC1-201ENST00000023939 TRIM34Q9BYJ4 488 aa16.34■□□□□ 0.21
RTFDC1-201ENST00000023939 C6orf50Q9HD87 102 aa16.34■□□□□ 0.21
RTFDC1-201ENST00000023939 TMOD2Q9NZR1 351 aa16.34■□□□□ 0.21
RTFDC1-201ENST00000023939 SYNPO2Q9UMS6 1093 aa16.34■□□□□ 0.21
RTFDC1-201ENST00000023939 CCDC194A0A1B0GVG4 234 aa16.33■□□□□ 0.21
RTFDC1-201ENST00000023939 NAPAP54920 295 aa16.33■□□□□ 0.21
RTFDC1-201ENST00000023939 PTGDRQ13258 359 aa16.33■□□□□ 0.21
RTFDC1-201ENST00000023939 ZRSR1Q15695 479 aaKnown RBP16.33■□□□□ 0.21
RTFDC1-201ENST00000023939 DALRD3Q5D0E6 543 aaKnown RBP16.33■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms