RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 COG2Q14746 738 aa12.34□□□□□ -0.43
SCN1A-222ENST00000642141 MORN1Q5T089 497 aa12.34□□□□□ -0.43
SCN1A-222ENST00000642141 C16orf86Q6ZW13 317 aa12.34□□□□□ -0.43
SCN1A-222ENST00000642141 UBE2Q1Q7Z7E8 422 aa12.34□□□□□ -0.43
SCN1A-222ENST00000642141 PI4K2BQ8TCG2 481 aa12.34□□□□□ -0.43
SCN1A-222ENST00000642141 SOCS4Q8WXH5 440 aa12.34□□□□□ -0.43
SCN1A-222ENST00000642141 APPBP2Q92624 585 aa12.34□□□□□ -0.43
SCN1A-222ENST00000642141 PAWRQ96IZ0 340 aaKnown RBP12.34□□□□□ -0.43
SCN1A-222ENST00000642141 FSD1Q9BTV5 496 aa12.34□□□□□ -0.43
SCN1A-222ENST00000642141 ARHGEF10LQ9HCE6 1279 aa12.34□□□□□ -0.43
SCN1A-222ENST00000642141 COLQQ9Y215 455 aaPredicted RBP12.34□□□□□ -0.43
SCN1A-222ENST00000642141 PRDM1O75626 825 aa12.33□□□□□ -0.44
SCN1A-222ENST00000642141 FLOT1O75955 427 aa12.33□□□□□ -0.44
SCN1A-222ENST00000642141 CCND3P30281 292 aaPredicted RBP12.33□□□□□ -0.44
SCN1A-222ENST00000642141 RGS2P41220 211 aa12.33□□□□□ -0.44
SCN1A-222ENST00000642141 TDO2P48775 406 aa12.33□□□□□ -0.44
SCN1A-222ENST00000642141 CCNA1P78396 465 aa12.33□□□□□ -0.44
SCN1A-222ENST00000642141 CACNB2Q08289 660 aaPredicted RBP12.33□□□□□ -0.44
SCN1A-222ENST00000642141 HABP4Q5JVS0 413 aaKnown RBP12.33□□□□□ -0.44
SCN1A-222ENST00000642141 GTF3C2Q8WUA4 911 aaPredicted RBP12.33□□□□□ -0.44
SCN1A-222ENST00000642141 USP6NLQ92738 828 aa12.33□□□□□ -0.44
SCN1A-222ENST00000642141 CHMP4CQ96CF2 233 aa12.33□□□□□ -0.44
SCN1A-222ENST00000642141 CCDC17Q96LX7 622 aa12.33□□□□□ -0.44
SCN1A-222ENST00000642141 MKNK2Q9HBH9 465 aa12.33□□□□□ -0.44
SCN1A-222ENST00000642141 FBXO28Q9NVF7 368 aa12.33□□□□□ -0.44
SCN1A-222ENST00000642141 FLRT1Q9NZU1 646 aa12.33□□□□□ -0.44
SCN1A-222ENST00000642141 ZBTB47Q9UFB7 747 aaPredicted RBP12.33□□□□□ -0.44
SCN1A-222ENST00000642141 TMX2Q9Y320 296 aa12.33□□□□□ -0.44
SCN1A-222ENST00000642141 RPTORQ8N122 1335 aa12.33□□□□□ -0.44
SCN1A-222ENST00000642141 ERC2O15083 957 aa12.32□□□□□ -0.44
SCN1A-222ENST00000642141 ZFYP08048 801 aaPredicted RBP12.32□□□□□ -0.44
SCN1A-222ENST00000642141 XRCC5P13010 732 aaKnown RBP12.32□□□□□ -0.44
SCN1A-222ENST00000642141 MX1P20591 662 aa12.32□□□□□ -0.44
SCN1A-222ENST00000642141 PTPREP23469 700 aa12.32□□□□□ -0.44
SCN1A-222ENST00000642141 MAP2K5Q13163 448 aa12.32□□□□□ -0.44
SCN1A-222ENST00000642141 CCDC129Q6ZRS4 1044 aa12.32□□□□□ -0.44
SCN1A-222ENST00000642141 ATG4CQ96DT6 458 aa12.32□□□□□ -0.44
SCN1A-222ENST00000642141 NUP88Q99567 741 aaPredicted RBP12.32□□□□□ -0.44
SCN1A-222ENST00000642141 HTATIP2Q9BUP3 242 aa12.32□□□□□ -0.44
SCN1A-222ENST00000642141 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.32□□□□□ -0.44
SCN1A-222ENST00000642141 MOV10L1Q9BXT6 1211 aaKnown RBP12.32□□□□□ -0.44
SCN1A-222ENST00000642141 CRISPLD2Q9H0B8 497 aa12.32□□□□□ -0.44
SCN1A-222ENST00000642141 VCPKMTQ9H867 229 aa12.32□□□□□ -0.44
SCN1A-222ENST00000642141 KANSL2Q9H9L4 492 aa12.32□□□□□ -0.44
SCN1A-222ENST00000642141 EPB41L4AQ9HCS5 686 aaPredicted RBP12.32□□□□□ -0.44
SCN1A-222ENST00000642141 HOXC10Q9NYD6 342 aa12.32□□□□□ -0.44
SCN1A-222ENST00000642141 ARPP21Q9UBL0 812 aaPredicted RBP12.32□□□□□ -0.44
SCN1A-222ENST00000642141 IVNS1ABPQ9Y6Y0 642 aa12.32□□□□□ -0.44
SCN1A-222ENST00000642141 TTC41PQ6P2S7 1318 aa12.32□□□□□ -0.44
SCN1A-222ENST00000642141 PLXNB2O15031 1838 aa12.32□□□□□ -0.44
SCN1A-222ENST00000642141 SLC15A5A6NIM6 579 aa12.31□□□□□ -0.44
SCN1A-222ENST00000642141 EVI5O60447 810 aa12.31□□□□□ -0.44
SCN1A-222ENST00000642141 GLRX3O76003 335 aaKnown RBP12.31□□□□□ -0.44
SCN1A-222ENST00000642141 RASA1P20936 1047 aa12.31□□□□□ -0.44
SCN1A-222ENST00000642141 B4GALNT3Q6L9W6 998 aa12.31□□□□□ -0.44
SCN1A-222ENST00000642141 CHRDL2Q6WN34 429 aa12.31□□□□□ -0.44
SCN1A-222ENST00000642141 LBX2Q6XYB7 198 aa12.31□□□□□ -0.44
SCN1A-222ENST00000642141 NCAPG2Q86XI2 1143 aa12.31□□□□□ -0.44
SCN1A-222ENST00000642141 NPLOC4Q8TAT6 608 aa12.31□□□□□ -0.44
SCN1A-222ENST00000642141 GCC1Q96CN9 775 aa12.31□□□□□ -0.44
SCN1A-222ENST00000642141 APBA2Q99767 749 aa12.31□□□□□ -0.44
SCN1A-222ENST00000642141 SPATC1LQ9H0A9 340 aa12.31□□□□□ -0.44
SCN1A-222ENST00000642141 PCDH10Q9P2E7 1040 aa12.31□□□□□ -0.44
SCN1A-222ENST00000642141 PATL2C9JE40 543 aaKnown RBP12.3□□□□□ -0.44
SCN1A-222ENST00000642141 ERCC3P19447 782 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 CNGA1P29973 690 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 DSG3P32926 999 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 CYP2C19P33261 490 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 SBK1Q52WX2 424 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 FAM83BQ5T0W9 1011 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 MAP3K21Q5TCX8 1036 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 NECAB2Q7Z6G3 386 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 DPP9Q86TI2 863 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 IFNL3Q8IZI9 196 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 LPAR1Q92633 364 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 SH2D4AQ9H788 454 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 GOPCQ9HD26 462 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 INCENPQ9NQS7 918 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 CLIP2Q9UDT6 1046 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 MYH7P12883 1935 aa12.3□□□□□ -0.44
SCN1A-222ENST00000642141 GNAT2P19087 354 aa12.29□□□□□ -0.44
SCN1A-222ENST00000642141 ADORA2AP29274 412 aa12.29□□□□□ -0.44
SCN1A-222ENST00000642141 SLC4A3P48751 1232 aa12.29□□□□□ -0.44
SCN1A-222ENST00000642141 GRB14Q14449 540 aa12.29□□□□□ -0.44
SCN1A-222ENST00000642141 TMEM132BQ14DG7 1078 aa12.29□□□□□ -0.44
SCN1A-222ENST00000642141 LRRFIP1Q32MZ4 808 aaKnown RBP12.29□□□□□ -0.44
SCN1A-222ENST00000642141 FAM47AQ5JRC9 791 aa12.29□□□□□ -0.44
SCN1A-222ENST00000642141 ZMYM1Q5SVZ6 1142 aa12.29□□□□□ -0.44
SCN1A-222ENST00000642141 MFSD14CQ5VZR4 134 aa12.29□□□□□ -0.44
SCN1A-222ENST00000642141 GIMAP6Q6P9H5 292 aa12.29□□□□□ -0.44
SCN1A-222ENST00000642141 TRMT44Q8IYL2 757 aaKnown RBP12.29□□□□□ -0.44
SCN1A-222ENST00000642141 ZNF444Q8N0Y2 327 aaPredicted RBP12.29□□□□□ -0.44
SCN1A-222ENST00000642141 LNPKQ9C0E8 428 aa12.29□□□□□ -0.44
SCN1A-222ENST00000642141 WDR46O15213 610 aaKnown RBP12.28□□□□□ -0.44
SCN1A-222ENST00000642141 COBLO75128 1261 aa12.28□□□□□ -0.44
SCN1A-222ENST00000642141 MNX1P50219 401 aaPredicted RBP12.28□□□□□ -0.44
SCN1A-222ENST00000642141 PDE1AP54750 535 aa12.28□□□□□ -0.44
SCN1A-222ENST00000642141 PRAMEF19Q5SWL8 479 aa12.28□□□□□ -0.44
SCN1A-222ENST00000642141 ANO1Q5XXA6 986 aa12.28□□□□□ -0.44
SCN1A-222ENST00000642141 C7orf61Q8IZ16 206 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms