RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 IZUMO3Q5VZ72 239 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 NBPF10Q6P3W6 841 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF579Q8NAF0 562 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 ZSCAN18Q8TBC5 510 aaPredicted RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 AAASQ9NRG9 546 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 TRMT1Q9NXH9 659 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 NPHP3Q7Z494 1330 aa3.07□□□□□ -1.92
SCN1A-219ENST00000641575 TOP2AP11388 1531 aaKnown RBP3.07□□□□□ -1.92
SCN1A-219ENST00000641575 CRCPO75575 148 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 FAM160A1Q05DH4 1040 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 GABPB1Q06547 395 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 TBC1D25Q3MII6 688 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SUPT20HL1Q3ZLR7 823 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 FNBP4Q8N3X1 1017 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 RNF10Q8N5U6 811 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ADD3Q9UEY8 706 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ABCF2Q9UG63 623 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 RIPOR2Q9Y4F9 1068 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 WDR17Q8IZU2 1322 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 BIVM-ERCC5R4GMW8 1640 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ZSCAN5CA6NGD5 496 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SYF2O95926 243 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 HOXC6P09630 235 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 GHRP10912 638 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 BLVRAP53004 296 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 RIPK4P57078 832 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 PPP2R5AQ15172 486 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 MUM1Q2TAK8 710 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 C6orf118Q5T5N4 469 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SPDYE1Q8NFV5 336 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SSH3Q8TE77 659 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 CSRNP1Q96S65 589 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 CES2O00748 559 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 RPLP2P05387 115 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 UBTFL1P0CB47 393 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 AP3B2Q13367 1082 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ARID5BQ14865 1188 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 FYB2Q5VWT5 728 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 OTUD6AQ7L8S5 288 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 PNMA8AQ86V59 439 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 NFATC2IPQ8NCF5 419 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 CCDC68Q9H2F9 335 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 TTF2Q9UNY4 1162 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SLC4A7Q9Y6M7 1214 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 RXRBP28702 533 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 NEDD9Q14511 834 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ISLR2Q6UXK2 745 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 RSRC2Q7L4I2 434 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF408Q9H9D4 720 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ALG6Q9Y672 507 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 LAMC3Q9Y6N6 1575 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SRGAP3O43295 1099 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 STX10O60499 249 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SMIM24O75264 130 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 FLOT1O75955 427 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 TRIM68Q6AZZ1 485 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 TTC19Q6DKK2 380 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 FNBP1Q96RU3 617 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 HTATIP2Q9BUP3 242 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 DIABLOQ9NR28 239 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ZSCAN32Q9NX65 697 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 TLN1Q9Y490 2541 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 K7ELQ4 463 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ATP5DP30049 168 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 LONP1P36776 959 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 PEX19P40855 299 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 DNA2P51530 1060 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 MTERF2Q49AM1 385 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 PDZD4Q76G19 769 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SNX19Q92543 992 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 DDX50Q9BQ39 737 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 CENPKQ9BS16 269 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 GPBP1L1Q9HC44 474 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 PHLPP2Q6ZVD8 1323 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 FMNL1O95466 1100 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SLC5A1P13866 664 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF174Q15697 407 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 PPP1R21Q6ZMI0 780 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SHCBP1Q8NEM2 672 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 CCHCR1Q8TD31 782 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 OTUB1Q96FW1 271 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 NKIRAS1Q9NYS0 192 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 TRIM10Q9UDY6 481 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 PCDHGB3Q9Y5G1 929 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 THOC2Q8NI27 1593 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SPDYE16A6NNV3 312 aaPredicted RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ZMYND10O75800 440 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 BMP15O95972 392 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 MED21Q13503 144 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 TMEM132BQ14DG7 1078 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SPDYE2Q495Y8 402 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 IL17RAQ96F46 866 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 CDV3Q9UKY7 258 aaKnown RBP3.06□□□□□ -1.92
SCN1A-219ENST00000641575 PPME1Q9Y570 386 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 E9PMD0 336 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ZNF131P52739 623 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 NR1H3Q13133 447 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 PRKG1Q13976 671 aa3.06□□□□□ -1.92
SCN1A-219ENST00000641575 ELOAQ14241 798 aaKnown RBP3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms