RNA–Protein interactions for RNA: ENST00000637897.1

PNKP-229, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 190 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-229ENST00000637897 SBK1Q52WX2 424 aa9.44□□□□□ -0.9
PNKP-229ENST00000637897 LHX8Q68G74 356 aa9.44□□□□□ -0.9
PNKP-229ENST00000637897 TRPV1Q8NER1 839 aa9.44□□□□□ -0.9
PNKP-229ENST00000637897 REPS2Q8NFH8 660 aa9.44□□□□□ -0.9
PNKP-229ENST00000637897 APPBP2Q92624 585 aa9.44□□□□□ -0.9
PNKP-229ENST00000637897 TRIM34Q9BYJ4 488 aa9.44□□□□□ -0.9
PNKP-229ENST00000637897 XRN2Q9H0D6 950 aaKnown RBP eCLIP9.44□□□□□ -0.9
PNKP-229ENST00000637897 TSHZ2Q9NRE2 1034 aa9.44□□□□□ -0.9
PNKP-229ENST00000637897 FBXO28Q9NVF7 368 aa9.44□□□□□ -0.9
PNKP-229ENST00000637897 TAOK2Q9UL54 1235 aa9.44□□□□□ -0.9
PNKP-229ENST00000637897 ADAMTS5Q9UNA0 930 aa9.44□□□□□ -0.9
PNKP-229ENST00000637897 RABGAP1Q9Y3P9 1069 aa9.44□□□□□ -0.9
PNKP-229ENST00000637897 MYH8P13535 1937 aa9.44□□□□□ -0.9
PNKP-229ENST00000637897 ROBO3Q96MS0 1386 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 GPAA1O43292 621 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 IGHDP01880 384 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 HMGCRP04035 888 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 XRCC5P13010 732 aaKnown RBP9.43□□□□□ -0.9
PNKP-229ENST00000637897 EEF2P13639 858 aaKnown RBP9.43□□□□□ -0.9
PNKP-229ENST00000637897 CCND3P30281 292 aaPredicted RBP9.43□□□□□ -0.9
PNKP-229ENST00000637897 DSG3P32926 999 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 UBXN2AP68543 259 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 CACNB2Q08289 660 aaPredicted RBP9.43□□□□□ -0.9
PNKP-229ENST00000637897 HABP4Q5JVS0 413 aaKnown RBP9.43□□□□□ -0.9
PNKP-229ENST00000637897 CCDC129Q6ZRS4 1044 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 TMEM179Q6ZVK1 233 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 SPICE1Q8N0Z3 855 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 STK11IPQ8N1F8 1099 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 ATG4CQ96DT6 458 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 FEZ1Q99689 392 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 MOV10L1Q9BXT6 1211 aaKnown RBP9.43□□□□□ -0.9
PNKP-229ENST00000637897 VCPKMTQ9H867 229 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 CABP5Q9NP86 173 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 INCENPQ9NQS7 918 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 BIN2Q9UBW5 565 aaPredicted RBP9.43□□□□□ -0.9
PNKP-229ENST00000637897 SWAP70Q9UH65 585 aa9.43□□□□□ -0.9
PNKP-229ENST00000637897 COLQQ9Y215 455 aaPredicted RBP9.43□□□□□ -0.9
PNKP-229ENST00000637897 COL11A1P12107 1806 aaPredicted RBP9.42□□□□□ -0.9
PNKP-229ENST00000637897 PFASO15067 1338 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 TTC41PQ6P2S7 1318 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 RPTORQ8N122 1335 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 MPHOSPH10O00566 681 aaKnown RBP9.42□□□□□ -0.9
PNKP-229ENST00000637897 COBLO75128 1261 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 FARP2O94887 1054 aaPredicted RBP9.42□□□□□ -0.9
PNKP-229ENST00000637897 PRKAR2AP13861 404 aaKnown RBP9.42□□□□□ -0.9
PNKP-229ENST00000637897 PTPREP23469 700 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 MAPK4P31152 587 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 USP14P54578 494 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 ICA1Q05084 483 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 HDAC1Q13547 482 aaPredicted RBP9.42□□□□□ -0.9
PNKP-229ENST00000637897 AAMPQ13685 434 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 GRB14Q14449 540 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 ZMYM1Q5SVZ6 1142 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 VPS53Q5VIR6 699 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 PLEKHH3Q7Z736 793 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 PAWRQ96IZ0 340 aaKnown RBP9.42□□□□□ -0.9
PNKP-229ENST00000637897 NUDT12Q9BQG2 462 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.42□□□□□ -0.92e-15■■■■■ 85.3
PNKP-229ENST00000637897 STAP2Q9UGK3 403 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 OGDHLQ9ULD0 1010 aa9.42□□□□□ -0.9
PNKP-229ENST00000637897 FRMPD3Q5JV73 1810 aa9.41□□□□□ -0.9
PNKP-229ENST00000637897 PRDM1O75626 825 aa9.41□□□□□ -0.9
PNKP-229ENST00000637897 HOXC6P09630 235 aa9.41□□□□□ -0.9
PNKP-229ENST00000637897 MX1P20591 662 aa9.41□□□□□ -0.9
PNKP-229ENST00000637897 FXR1P51114 621 aaKnown RBP eCLIP9.41□□□□□ -0.9
PNKP-229ENST00000637897 MAP2K5Q13163 448 aa9.41□□□□□ -0.9
PNKP-229ENST00000637897 COG2Q14746 738 aa9.41□□□□□ -0.9
PNKP-229ENST00000637897 TMEM132BQ14DG7 1078 aa9.41□□□□□ -0.9
PNKP-229ENST00000637897 IFNL3Q8IZI9 196 aa9.41□□□□□ -0.9
PNKP-229ENST00000637897 NUP88Q99567 741 aaPredicted RBP9.41□□□□□ -0.9
PNKP-229ENST00000637897 SPATC1LQ9H0A9 340 aa9.41□□□□□ -0.9
PNKP-229ENST00000637897 ZNFX1Q9P2E3 1918 aaKnown RBP9.41□□□□□ -0.9
PNKP-229ENST00000637897 ZNF236Q9UL36 1845 aa9.4□□□□□ -0.9
PNKP-229ENST00000637897 PATL2C9JE40 543 aaKnown RBP9.4□□□□□ -0.9
PNKP-229ENST00000637897 TFRCP02786 760 aaKnown RBP9.4□□□□□ -0.9
PNKP-229ENST00000637897 COL6A1P12109 1028 aa9.4□□□□□ -0.9
PNKP-229ENST00000637897 ERCC3P19447 782 aa9.4□□□□□ -0.9
PNKP-229ENST00000637897 PDE1AP54750 535 aa9.4□□□□□ -0.9
PNKP-229ENST00000637897 ANKRD45Q5TZF3 282 aa9.4□□□□□ -0.9
PNKP-229ENST00000637897 GIMAP6Q6P9H5 292 aa9.4□□□□□ -0.9
PNKP-229ENST00000637897 RASGRP2Q7LDG7 609 aa9.4□□□□□ -0.9
PNKP-229ENST00000637897 SMC5Q8IY18 1101 aa9.4□□□□□ -0.9
PNKP-229ENST00000637897 GTF3C2Q8WUA4 911 aaPredicted RBP9.4□□□□□ -0.9
PNKP-229ENST00000637897 SOCS4Q8WXH5 440 aa9.4□□□□□ -0.9
PNKP-229ENST00000637897 CCDC17Q96LX7 622 aa9.4□□□□□ -0.9
PNKP-229ENST00000637897 APBA2Q99767 749 aa9.4□□□□□ -0.9
PNKP-229ENST00000637897 RBM27Q9P2N5 1060 aaKnown RBP9.4□□□□□ -0.9
PNKP-229ENST00000637897 ARPP21Q9UBL0 812 aaPredicted RBP9.4□□□□□ -0.9
PNKP-229ENST00000637897 ZNF214Q9UL59 606 aaPredicted RBP9.4□□□□□ -0.9
PNKP-229ENST00000637897 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.4□□□□□ -0.9
PNKP-229ENST00000637897 SMCHD1A6NHR9 2005 aa9.39□□□□□ -0.91
PNKP-229ENST00000637897 SLC15A5A6NIM6 579 aa9.39□□□□□ -0.91
PNKP-229ENST00000637897 MINDY4BA8MYZ0 360 aa9.39□□□□□ -0.91
PNKP-229ENST00000637897 GLRX3O76003 335 aaKnown RBP9.39□□□□□ -0.91
PNKP-229ENST00000637897 NDUFB10O96000 172 aa9.39□□□□□ -0.91
PNKP-229ENST00000637897 CYP2C19P33261 490 aa9.39□□□□□ -0.91
PNKP-229ENST00000637897 RGS2P41220 211 aa9.39□□□□□ -0.91
PNKP-229ENST00000637897 FAM83BQ5T0W9 1011 aa9.39□□□□□ -0.91
PNKP-229ENST00000637897 ZSCAN25Q6NSZ9 544 aa9.39□□□□□ -0.91
PNKP-229ENST00000637897 LPAR1Q92633 364 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms