RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 SLC44A5Q8NCS7 719 aa17.93■□□□□ 0.46
CLN3-249ENST00000636685 NOL10Q9BSC4 688 aaKnown RBP17.93■□□□□ 0.46
CLN3-249ENST00000636685 XPNPEP3Q9NQH7 507 aa17.93■□□□□ 0.46
CLN3-249ENST00000636685 MYH1P12882 1939 aa17.93■□□□□ 0.46
CLN3-249ENST00000636685 CHD7Q9P2D1 2997 aa17.92■□□□□ 0.46
CLN3-249ENST00000636685 A0A1W2PQ45 241 aaPredicted RBP17.92■□□□□ 0.46
CLN3-249ENST00000636685 A0A1W2PQY0 241 aa17.92■□□□□ 0.46
CLN3-249ENST00000636685 PGK1P00558 417 aa17.92■□□□□ 0.46
CLN3-249ENST00000636685 UBTFL1P0CB47 393 aaPredicted RBP17.92■□□□□ 0.46
CLN3-249ENST00000636685 TFF2Q03403 129 aa17.92■□□□□ 0.46
CLN3-249ENST00000636685 TFCP2Q12800 502 aa17.92■□□□□ 0.46
CLN3-249ENST00000636685 TMEM240Q5SV17 173 aa17.92■□□□□ 0.46
CLN3-249ENST00000636685 ACER1Q8TDN7 264 aa17.92■□□□□ 0.46
CLN3-249ENST00000636685 RPAP3Q9H6T3 665 aaPredicted RBP17.92■□□□□ 0.46
CLN3-249ENST00000636685 COPRSQ9NQ92 184 aa17.92■□□□□ 0.46
CLN3-249ENST00000636685 CXXC1Q9P0U4 656 aaPredicted RBP17.92■□□□□ 0.46
CLN3-249ENST00000636685 LRP2BPQ9P2M1 347 aa17.92■□□□□ 0.46
CLN3-249ENST00000636685 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.92■□□□□ 0.46
CLN3-249ENST00000636685 MYO5AQ9Y4I1 1855 aaKnown RBP17.92■□□□□ 0.46
CLN3-249ENST00000636685 STRNO43815 780 aa17.91■□□□□ 0.46
CLN3-249ENST00000636685 TIMP1P01033 207 aa17.91■□□□□ 0.46
CLN3-249ENST00000636685 USP14P54578 494 aa17.91■□□□□ 0.46
CLN3-249ENST00000636685 RAB3GAP1Q15042 981 aa17.91■□□□□ 0.46
CLN3-249ENST00000636685 NEUROD6Q96NK8 337 aa17.91■□□□□ 0.46
CLN3-249ENST00000636685 KIAA1683Q9H0B3 1180 aa17.91■□□□□ 0.46
CLN3-249ENST00000636685 DCDC2CA8MYV0 355 aa17.9■□□□□ 0.46
CLN3-249ENST00000636685 BAG3O95817 575 aa17.9■□□□□ 0.46
CLN3-249ENST00000636685 RARBP10826 455 aa17.9■□□□□ 0.46
CLN3-249ENST00000636685 ERCC3P19447 782 aa17.9■□□□□ 0.46
CLN3-249ENST00000636685 KCNQ1P51787 676 aa17.9■□□□□ 0.46
CLN3-249ENST00000636685 RASIP1Q5U651 963 aa17.9■□□□□ 0.46
CLN3-249ENST00000636685 ANKRD33Q7Z3H0 272 aa17.9■□□□□ 0.46
CLN3-249ENST00000636685 RNF180Q86T96 592 aa17.9■□□□□ 0.46
CLN3-249ENST00000636685 MAML3Q96JK9 1138 aa17.9■□□□□ 0.46
CLN3-249ENST00000636685 NKX2-4Q9H2Z4 354 aa17.9■□□□□ 0.46
CLN3-249ENST00000636685 AKAP2Q9Y2D5 859 aa17.9■□□□□ 0.46
CLN3-249ENST00000636685 HLA-DOAP06340 250 aa17.89■□□□□ 0.45
CLN3-249ENST00000636685 PLCG2P16885 1265 aa17.89■□□□□ 0.45
CLN3-249ENST00000636685 MCAMP43121 646 aa17.89■□□□□ 0.45
CLN3-249ENST00000636685 PPP4CP60510 307 aa17.89■□□□□ 0.45
CLN3-249ENST00000636685 NAA16Q6N069 864 aaPredicted RBP17.89■□□□□ 0.45
CLN3-249ENST00000636685 MFSD5Q6N075 450 aa17.89■□□□□ 0.45
CLN3-249ENST00000636685 ADGRA1Q86SQ6 560 aa17.89■□□□□ 0.45
CLN3-249ENST00000636685 MICALL1Q8N3F8 863 aa17.89■□□□□ 0.45
CLN3-249ENST00000636685 TOX2Q96NM4 488 aa17.89■□□□□ 0.45
CLN3-249ENST00000636685 SPATC1LQ9H0A9 340 aa17.89■□□□□ 0.45
CLN3-249ENST00000636685 TSPYL2Q9H2G4 693 aaPredicted RBP17.89■□□□□ 0.45
CLN3-249ENST00000636685 TBX21Q9UL17 535 aa17.89■□□□□ 0.45
CLN3-249ENST00000636685 A0A0G2JMZ2 1700 aa17.89■□□□□ 0.45
CLN3-249ENST00000636685 ACRP10323 421 aa17.88■□□□□ 0.45
CLN3-249ENST00000636685 ARID4AP29374 1257 aaPredicted RBP17.88■□□□□ 0.45
CLN3-249ENST00000636685 PPIGQ13427 754 aaKnown RBP eCLIP17.88■□□□□ 0.456e-7■□□□□ 10.9
CLN3-249ENST00000636685 GORABQ5T7V8 394 aa17.88■□□□□ 0.45
CLN3-249ENST00000636685 ALYREFQ86V81 257 aaKnown RBP17.88■□□□□ 0.45
CLN3-249ENST00000636685 SHCBP1Q8NEM2 672 aa17.88■□□□□ 0.45
CLN3-249ENST00000636685 SSH1Q8WYL5 1049 aa17.88■□□□□ 0.45
CLN3-249ENST00000636685 LENG1Q96BZ8 264 aaPredicted RBP17.88■□□□□ 0.45
CLN3-249ENST00000636685 SLC5A4Q9NY91 659 aa17.88■□□□□ 0.45
CLN3-249ENST00000636685 MSRAQ9UJ68 235 aa17.88■□□□□ 0.45
CLN3-249ENST00000636685 PRRC2BQ5JSZ5 2229 aaKnown RBP17.88■□□□□ 0.45
CLN3-249ENST00000636685 CSF2RAP15509 400 aa17.87■□□□□ 0.45
CLN3-249ENST00000636685 TAL1P17542 331 aaPredicted RBP17.87■□□□□ 0.45
CLN3-249ENST00000636685 RAB30Q15771 203 aa17.87■□□□□ 0.45
CLN3-249ENST00000636685 TMEM31Q5JXX7 168 aa17.87■□□□□ 0.45
CLN3-249ENST00000636685 TATDN1Q6P1N9 297 aa17.87■□□□□ 0.45
CLN3-249ENST00000636685 ATF7IPQ6VMQ6 1270 aa17.87■□□□□ 0.45
CLN3-249ENST00000636685 ZNF365Q70YC5 407 aa17.87■□□□□ 0.45
CLN3-249ENST00000636685 STARD7Q9NQZ5 370 aa17.87■□□□□ 0.45
CLN3-249ENST00000636685 COG2Q14746 738 aa17.86■□□□□ 0.45
CLN3-249ENST00000636685 CCDC174Q6PII3 467 aa17.86■□□□□ 0.45
CLN3-249ENST00000636685 NCAPG2Q86XI2 1143 aa17.86■□□□□ 0.45
CLN3-249ENST00000636685 SNRKQ9NRH2 765 aa17.86■□□□□ 0.45
CLN3-249ENST00000636685 YBX2Q9Y2T7 364 aaKnown RBP17.86■□□□□ 0.45
CLN3-249ENST00000636685 ADAMTS4O75173 837 aa17.85■□□□□ 0.45
CLN3-249ENST00000636685 ACLYP53396 1101 aa17.85■□□□□ 0.45
CLN3-249ENST00000636685 DYNLL1P63167 89 aaKnown RBP17.85■□□□□ 0.45
CLN3-249ENST00000636685 PLS1Q14651 629 aa17.85■□□□□ 0.45
CLN3-249ENST00000636685 ABCB5Q2M3G0 1257 aa17.85■□□□□ 0.45
CLN3-249ENST00000636685 HOXC10Q9NYD6 342 aa17.85■□□□□ 0.45
CLN3-249ENST00000636685 NRBP1Q9UHY1 535 aa17.85■□□□□ 0.45
CLN3-249ENST00000636685 AAK1Q2M2I8 961 aa17.84■□□□□ 0.45
CLN3-249ENST00000636685 CERKLQ49MI3 558 aaPredicted RBP17.84■□□□□ 0.45
CLN3-249ENST00000636685 PSRC1Q6PGN9 363 aaPredicted RBP17.84■□□□□ 0.45
CLN3-249ENST00000636685 ABRAQ8N0Z2 381 aa17.84■□□□□ 0.45
CLN3-249ENST00000636685 TANGO6Q9C0B7 1094 aa17.84■□□□□ 0.45
CLN3-249ENST00000636685 MROH8Q9H579 483 aa17.84■□□□□ 0.45
CLN3-249ENST00000636685 SLC28A3Q9HAS3 691 aa17.84■□□□□ 0.45
CLN3-249ENST00000636685 COL11A1P12107 1806 aaPredicted RBP17.84■□□□□ 0.45
CLN3-249ENST00000636685 LRRC37A2A6NM11 1700 aa17.84■□□□□ 0.45
CLN3-249ENST00000636685 FAM86C2PA6NEL3 165 aa17.83■□□□□ 0.44
CLN3-249ENST00000636685 GUCY1A2P33402 732 aa17.83■□□□□ 0.44
CLN3-249ENST00000636685 SKIV2LQ15477 1246 aaKnown RBP17.83■□□□□ 0.44
CLN3-249ENST00000636685 TMEM199Q8N511 208 aa17.83■□□□□ 0.44
CLN3-249ENST00000636685 NUP133Q8WUM0 1156 aa17.83■□□□□ 0.44
CLN3-249ENST00000636685 CDCA7LQ96GN5 454 aa17.83■□□□□ 0.44
CLN3-249ENST00000636685 TSEN34Q9BSV6 310 aaKnown RBP17.83■□□□□ 0.44
CLN3-249ENST00000636685 PPP1R12CQ9BZL4 782 aa17.83■□□□□ 0.44
CLN3-249ENST00000636685 C11orf16Q9NQ32 467 aa17.83■□□□□ 0.44
CLN3-249ENST00000636685 ROBO3Q96MS0 1386 aa17.82■□□□□ 0.44
CLN3-249ENST00000636685 APBB1O00213 710 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms