RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 FAM102BQ5T8I3 360 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 MIER3Q7Z3K6 550 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 SESTD1Q86VW0 696 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 FAM71BQ8TC56 605 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 TCP10Q12799 353 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 CTAGE3PQ8IX95 158 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 GOLGA5Q8TBA6 731 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 TBC1D22AQ8WUA7 517 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 CDKL2Q92772 493 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 SPDL1Q96EA4 605 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 TEX12Q9BXU0 123 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 BZW2Q9Y6E2 419 aaKnown RBP6.11□□□□□ -1.43
SCN1A-209ENST00000635750 SYF2O95926 243 aaKnown RBP6.11□□□□□ -1.43
SCN1A-209ENST00000635750 IL1RL1Q01638 556 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 RAPH1Q70E73 1250 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 FASTKD5Q7L8L6 764 aaKnown RBP6.11□□□□□ -1.43
SCN1A-209ENST00000635750 MICAL1Q8TDZ2 1067 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 MMTAG2Q9BU76 263 aaKnown RBP6.11□□□□□ -1.43
SCN1A-209ENST00000635750 MRPL46Q9H2W6 279 aaKnown RBP6.11□□□□□ -1.43
SCN1A-209ENST00000635750 EFCC1Q9HA90 598 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 SFMBT1Q9UHJ3 866 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 GNGT2O14610 69 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 TXKP42681 527 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 CCDC38Q502W7 563 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 LRRC43Q8N309 656 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 FLAD1Q8NFF5 587 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 PGBD1Q96JS3 809 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 TTC25Q96NG3 672 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 VPS37BQ9H9H4 285 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 IFT122Q9HBG6 1241 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 MYO1AQ9UBC5 1043 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 ZRANB1Q9UGI0 708 aa6.11□□□□□ -1.43
SCN1A-209ENST00000635750 TROQ12816 1431 aaPredicted RBP6.11□□□□□ -1.43
SCN1A-209ENST00000635750 TESPA1A2RU30 521 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 RSRC2Q7L4I2 434 aaKnown RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 NCAPG2Q86XI2 1143 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 SMC5Q8IY18 1101 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 ANKRD35Q8N283 1001 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 ZBED2Q9BTP6 218 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 TYW1Q9NV66 732 aaKnown RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 SUFUQ9UMX1 484 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 PLCH2O75038 1416 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 WDR64B1ANS9 1081 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 N4BP1O75113 896 aaKnown RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 HCLS1P14317 486 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 BMP2KLQ5H9B9 411 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 RUFY3Q7L099 469 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 TRIM35Q9UPQ4 493 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 TTC41PQ6P2S7 1318 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 TFDP1Q14186 410 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 ZSCAN23Q3MJ62 389 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 KRT25Q7Z3Z0 450 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 FNBP4Q8N3X1 1017 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 CSGALNACT2Q8N6G5 542 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 AFAP1L1Q8TED9 768 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 LZICQ8WZA0 190 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 EXOC4Q96A65 974 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 NT5C3AQ9H0P0 336 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 EMILIN1Q9Y6C2 1016 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 ACEP12821 1306 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 ANXA13P27216 316 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 POLGP54098 1239 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 HERC4Q5GLZ8 1057 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 TPH2Q8IWU9 490 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 RETREG2Q8NC44 543 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 CXorf38Q8TB03 319 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 HELLSQ9NRZ9 838 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 BCS1LQ9Y276 419 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 CNPY2Q9Y2B0 182 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 PCDHB13Q9Y5F0 798 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 WDR17Q8IZU2 1322 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 ARHGAP42A6NI28 874 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 EIF3CLB5ME19 914 aaKnown RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 M0R2C6 588 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 GSTA4O15217 222 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 APBA3O96018 575 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 SAT1P21673 171 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 RNF219Q5W0B1 726 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 PEX26Q7Z412 305 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 TMEM87BQ96K49 555 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 EIF3CQ99613 913 aaKnown RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 NAPGQ99747 312 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 ABT1Q9ULW3 272 aaKnown RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 EIF3DO15371 548 aaKnown RBP eCLIP6.1□□□□□ -1.433e-6■■□□□ 11.9
SCN1A-209ENST00000635750 HP1BP3Q5SSJ5 553 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 DHX32Q7L7V1 743 aaKnown RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 DRC3Q9H069 523 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 XAB2Q9HCS7 855 aaKnown RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 PSDA5PKW4 1024 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 CIITAP33076 1130 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 PPP2R5AQ15172 486 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 KHDRBS2Q5VWX1 349 aaKnown RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 KRT26Q7Z3Y9 468 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 HELBQ8NG08 1087 aaPredicted RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 SNX29Q8TEQ0 813 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 ZC3H15Q8WU90 426 aaKnown RBP6.1□□□□□ -1.43
SCN1A-209ENST00000635750 DNAJC25Q9H1X3 360 aa6.1□□□□□ -1.43
SCN1A-209ENST00000635750 RNASE9P60153 205 aaKnown RBP6.09□□□□□ -1.43
SCN1A-209ENST00000635750 CFAP221Q4G0U5 840 aa6.09□□□□□ -1.43
SCN1A-209ENST00000635750 ODR4Q5SWX8 454 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms