RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 NMT2O60551 498 aa23.97■■□□□ 1.43
PTCD3-220ENST00000627371 CYP2C8P10632 490 aa23.97■■□□□ 1.43
PTCD3-220ENST00000627371 OSBPP22059 807 aa23.97■■□□□ 1.43
PTCD3-220ENST00000627371 NOVP48745 357 aa23.97■■□□□ 1.43
PTCD3-220ENST00000627371 NECTIN1Q15223 517 aa23.97■■□□□ 1.43
PTCD3-220ENST00000627371 GOPCQ9HD26 462 aa23.97■■□□□ 1.43
PTCD3-220ENST00000627371 CLIP2Q9UDT6 1046 aa23.97■■□□□ 1.43
PTCD3-220ENST00000627371 GTF3C3Q9Y5Q9 886 aa23.97■■□□□ 1.43
PTCD3-220ENST00000627371 B4E1Z4 1266 aa23.96■■□□□ 1.43
PTCD3-220ENST00000627371 KDM4AO75164 1064 aa23.96■■□□□ 1.43
PTCD3-220ENST00000627371 KIAA1755Q5JYT7 1200 aa23.96■■□□□ 1.43
PTCD3-220ENST00000627371 ASCC2Q9H1I8 757 aaPredicted RBP23.96■■□□□ 1.43
PTCD3-220ENST00000627371 PRDM10Q9NQV6 1147 aa23.96■■□□□ 1.43
PTCD3-220ENST00000627371 STX8Q9UNK0 236 aa23.96■■□□□ 1.43
PTCD3-220ENST00000627371 TAF6LQ9Y6J9 622 aa23.96■■□□□ 1.43
PTCD3-220ENST00000627371 USP17L15C9J2P7 530 aa23.95■■□□□ 1.42
PTCD3-220ENST00000627371 USP17L13C9JLJ4 530 aa23.95■■□□□ 1.42
PTCD3-220ENST00000627371 USP17L11C9JVI0 530 aa23.95■■□□□ 1.42
PTCD3-220ENST00000627371 USP17L18D6R9N7 530 aa23.95■■□□□ 1.42
PTCD3-220ENST00000627371 USP17L22D6RA61 530 aa23.95■■□□□ 1.42
PTCD3-220ENST00000627371 USP17L17D6RBQ6 530 aa23.95■■□□□ 1.42
PTCD3-220ENST00000627371 USP17L19D6RCP7 530 aa23.95■■□□□ 1.42
PTCD3-220ENST00000627371 USP17L20D6RJB6 530 aa23.95■■□□□ 1.42
PTCD3-220ENST00000627371 SLC27A2O14975 620 aa23.95■■□□□ 1.42
PTCD3-220ENST00000627371 REC8O95072 547 aa23.95■■□□□ 1.42
PTCD3-220ENST00000627371 IRX3P78415 501 aaPredicted RBP23.95■■□□□ 1.42
PTCD3-220ENST00000627371 USP17L24Q0WX57 530 aa23.95■■□□□ 1.42
PTCD3-220ENST00000627371 CREB3L3Q68CJ9 461 aa23.95■■□□□ 1.42
PTCD3-220ENST00000627371 RPAP3Q9H6T3 665 aaPredicted RBP23.95■■□□□ 1.42
PTCD3-220ENST00000627371 E7EWF7 191 aa23.94■■□□□ 1.42
PTCD3-220ENST00000627371 WDR46O15213 610 aaKnown RBP23.94■■□□□ 1.42
PTCD3-220ENST00000627371 TRDNQ13061 729 aa23.94■■□□□ 1.42
PTCD3-220ENST00000627371 STOX1Q6ZVD7 989 aa23.94■■□□□ 1.42
PTCD3-220ENST00000627371 SPICE1Q8N0Z3 855 aa23.94■■□□□ 1.42
PTCD3-220ENST00000627371 LRRC47Q8N1G4 583 aaKnown RBP23.94■■□□□ 1.42
PTCD3-220ENST00000627371 SMCR8Q8TEV9 937 aaPredicted RBP23.94■■□□□ 1.42
PTCD3-220ENST00000627371 ZNF296Q8WUU4 475 aaPredicted RBP23.94■■□□□ 1.42
PTCD3-220ENST00000627371 MGAMO43451 1857 aa23.94■■□□□ 1.42
PTCD3-220ENST00000627371 RNF20Q5VTR2 975 aa23.93■■□□□ 1.42
PTCD3-220ENST00000627371 C17orf99Q6UX52 265 aa23.93■■□□□ 1.42
PTCD3-220ENST00000627371 CATSPERGQ6ZRH7 1159 aa23.93■■□□□ 1.42
PTCD3-220ENST00000627371 IQCA1Q86XH1 822 aa23.93■■□□□ 1.42
PTCD3-220ENST00000627371 GMCL1P1Q8NEA9 526 aa23.93■■□□□ 1.42
PTCD3-220ENST00000627371 ZSWIM5Q9P217 1185 aa23.93■■□□□ 1.42
PTCD3-220ENST00000627371 A0A0G2JMZ2 1700 aa23.93■■□□□ 1.42
PTCD3-220ENST00000627371 F5H6K3 240 aa23.92■■□□□ 1.42
PTCD3-220ENST00000627371 FKTNO75072 461 aa23.92■■□□□ 1.42
PTCD3-220ENST00000627371 NDUFB10O96000 172 aa23.92■■□□□ 1.42
PTCD3-220ENST00000627371 KLRC3Q07444 240 aa23.92■■□□□ 1.42
PTCD3-220ENST00000627371 RALYLQ86SE5 291 aaKnown RBP23.92■■□□□ 1.42
PTCD3-220ENST00000627371 NCOA7Q8NI08 942 aa23.92■■□□□ 1.42
PTCD3-220ENST00000627371 TTC14Q96N46 770 aa23.92■■□□□ 1.42
PTCD3-220ENST00000627371 CPA4Q9UI42 421 aa23.92■■□□□ 1.42
PTCD3-220ENST00000627371 EPB41L2O43491 1005 aaKnown RBP23.91■■□□□ 1.42
PTCD3-220ENST00000627371 RAD21O60216 631 aa23.91■■□□□ 1.42
PTCD3-220ENST00000627371 BCRP11274 1271 aa23.91■■□□□ 1.42
PTCD3-220ENST00000627371 GCLCP48506 637 aaPredicted RBP23.91■■□□□ 1.42
PTCD3-220ENST00000627371 HERVK_113P62684 666 aa23.91■■□□□ 1.42
PTCD3-220ENST00000627371 CCDC178Q5BJE1 867 aa23.91■■□□□ 1.42
PTCD3-220ENST00000627371 P2RX7Q99572 595 aaKnown RBP23.91■■□□□ 1.42
PTCD3-220ENST00000627371 ZKSCAN3Q9BRR0 538 aa23.91■■□□□ 1.42
PTCD3-220ENST00000627371 TANGO6Q9C0B7 1094 aa23.91■■□□□ 1.42
PTCD3-220ENST00000627371 ZSWIM8A7E2V4 1837 aa23.91■■□□□ 1.42
PTCD3-220ENST00000627371 COL11A1P12107 1806 aaPredicted RBP23.9■■□□□ 1.42
PTCD3-220ENST00000627371 TOP1P11387 765 aaKnown RBP23.9■■□□□ 1.42
PTCD3-220ENST00000627371 SP3Q02447 781 aa23.9■■□□□ 1.42
PTCD3-220ENST00000627371 RCSD1Q6JBY9 416 aa23.9■■□□□ 1.42
PTCD3-220ENST00000627371 DGKHQ86XP1 1220 aa23.9■■□□□ 1.42
PTCD3-220ENST00000627371 GTF3C2Q8WUA4 911 aaPredicted RBP23.9■■□□□ 1.42
PTCD3-220ENST00000627371 ZSCAN10Q96SZ4 725 aaPredicted RBP23.9■■□□□ 1.42
PTCD3-220ENST00000627371 FAM83BQ5T0W9 1011 aa23.89■■□□□ 1.41
PTCD3-220ENST00000627371 CYB5R4Q7L1T6 521 aa23.89■■□□□ 1.41
PTCD3-220ENST00000627371 TMEM47Q9BQJ4 181 aa23.89■■□□□ 1.41
PTCD3-220ENST00000627371 UBAC1Q9BSL1 405 aa23.89■■□□□ 1.41
PTCD3-220ENST00000627371 TNKSO95271 1327 aa23.88■■□□□ 1.41
PTCD3-220ENST00000627371 FAM110CQ1W6H9 321 aa23.88■■□□□ 1.41
PTCD3-220ENST00000627371 SLFN13Q68D06 897 aa23.88■■□□□ 1.41
PTCD3-220ENST00000627371 LBX2Q6XYB7 198 aa23.88■■□□□ 1.41
PTCD3-220ENST00000627371 MB21D2Q8IYB1 491 aaPredicted RBP23.88■■□□□ 1.41
PTCD3-220ENST00000627371 ANKS1AQ92625 1134 aa23.88■■□□□ 1.41
PTCD3-220ENST00000627371 MYPNQ86TC9 1320 aa23.87■■□□□ 1.41
PTCD3-220ENST00000627371 SPDYE16A6NNV3 312 aaPredicted RBP23.87■■□□□ 1.41
PTCD3-220ENST00000627371 FLOT1O75955 427 aa23.87■■□□□ 1.41
PTCD3-220ENST00000627371 HSPA4P34932 840 aa23.87■■□□□ 1.41
PTCD3-220ENST00000627371 COG2Q14746 738 aa23.87■■□□□ 1.41
PTCD3-220ENST00000627371 TSGA10IPQ3SY00 556 aa23.87■■□□□ 1.41
PTCD3-220ENST00000627371 ANKRD13CQ8N6S4 541 aa23.87■■□□□ 1.41
PTCD3-220ENST00000627371 ENAHQ8N8S7 591 aaPredicted RBP23.87■■□□□ 1.41
PTCD3-220ENST00000627371 KCNB2Q92953 911 aa23.87■■□□□ 1.41
PTCD3-220ENST00000627371 ERO1AQ96HE7 468 aa23.87■■□□□ 1.41
PTCD3-220ENST00000627371 GMCL1Q96IK5 515 aa23.87■■□□□ 1.41
PTCD3-220ENST00000627371 NUP88Q99567 741 aaPredicted RBP23.87■■□□□ 1.41
PTCD3-220ENST00000627371 ZKSCAN1P17029 563 aaPredicted RBP23.86■■□□□ 1.41
PTCD3-220ENST00000627371 RASEFQ8IZ41 740 aa23.86■■□□□ 1.41
PTCD3-220ENST00000627371 HOXC10Q9NYD6 342 aa23.86■■□□□ 1.41
PTCD3-220ENST00000627371 MORF4L1Q9UBU8 362 aa23.86■■□□□ 1.41
PTCD3-220ENST00000627371 DSG3P32926 999 aa23.85■■□□□ 1.41
PTCD3-220ENST00000627371 SLC1A4P43007 532 aa23.85■■□□□ 1.41
PTCD3-220ENST00000627371 LACTBP83111 547 aaPredicted RBP23.85■■□□□ 1.41
PTCD3-220ENST00000627371 SEC23AQ15436 765 aa23.85■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms