RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 PTMAP06454 111 aaKnown RBP25.32■■□□□ 1.64
PNKP-220ENST00000627232 TOP1P11387 765 aaKnown RBP25.32■■□□□ 1.64
PNKP-220ENST00000627232 CALML3P27482 149 aa25.32■■□□□ 1.64
PNKP-220ENST00000627232 HDLBPQ00341 1268 aaKnown RBP25.32■■□□□ 1.64
PNKP-220ENST00000627232 SWAP70Q9UH65 585 aa25.32■■□□□ 1.64
PNKP-220ENST00000627232 STX8Q9UNK0 236 aa25.32■■□□□ 1.64
PNKP-220ENST00000627232 SRPRBQ9Y5M8 271 aaKnown RBP25.32■■□□□ 1.64
PNKP-220ENST00000627232 MSNP26038 577 aaKnown RBP25.32■■□□□ 1.64
PNKP-220ENST00000627232 IQCB1Q15051 598 aa25.32■■□□□ 1.64
PNKP-220ENST00000627232 STAG2Q8N3U4 1231 aa25.32■■□□□ 1.64
PNKP-220ENST00000627232 C7orf43Q8WVR3 580 aa25.32■■□□□ 1.64
PNKP-220ENST00000627232 CLIC6Q96NY7 704 aa25.32■■□□□ 1.64
PNKP-220ENST00000627232 MXD3Q9BW11 206 aa25.32■■□□□ 1.64
PNKP-220ENST00000627232 DBNDD1Q9H9R9 158 aa25.32■■□□□ 1.64
PNKP-220ENST00000627232 C10orf71Q711Q0 1435 aa25.31■■□□□ 1.64
PNKP-220ENST00000627232 SCN9AQ15858 1988 aa25.31■■□□□ 1.64
PNKP-220ENST00000627232 AP5Z1O43299 807 aa25.31■■□□□ 1.64
PNKP-220ENST00000627232 SMARCA1P28370 1054 aa25.31■■□□□ 1.64
PNKP-220ENST00000627232 CHRNA5P30532 468 aa25.31■■□□□ 1.64
PNKP-220ENST00000627232 TRAPPC10P48553 1259 aa25.31■■□□□ 1.64
PNKP-220ENST00000627232 NLRP5P59047 1200 aa25.31■■□□□ 1.64
PNKP-220ENST00000627232 CDC42EP5Q6NZY7 148 aa25.31■■□□□ 1.64
PNKP-220ENST00000627232 C11orf57Q6ZUT1 292 aaPredicted RBP25.31■■□□□ 1.64
PNKP-220ENST00000627232 SUPT20HQ8NEM7 779 aa25.31■■□□□ 1.64
PNKP-220ENST00000627232 ZDHHC15Q96MV8 337 aa25.31■■□□□ 1.64
PNKP-220ENST00000627232 NAT10Q9H0A0 1025 aaKnown RBP25.31■■□□□ 1.64
PNKP-220ENST00000627232 FAM13BQ9NYF5 915 aa25.31■■□□□ 1.64
PNKP-220ENST00000627232 ZKSCAN5Q9Y2L8 839 aa25.31■■□□□ 1.64
PNKP-220ENST00000627232 ECE2O60344 883 aa25.3■■□□□ 1.64
PNKP-220ENST00000627232 CRKP46108 304 aa25.3■■□□□ 1.64
PNKP-220ENST00000627232 SCNN1DP51172 638 aa25.3■■□□□ 1.64
PNKP-220ENST00000627232 PICALMQ13492 652 aa25.3■■□□□ 1.64
PNKP-220ENST00000627232 APOBEC3HQ6NTF7 200 aaKnown RBP25.3■■□□□ 1.64
PNKP-220ENST00000627232 CEP57L1Q8IYX8 460 aa25.3■■□□□ 1.64
PNKP-220ENST00000627232 SPZ1Q9BXG8 430 aa25.3■■□□□ 1.64
PNKP-220ENST00000627232 DDX4Q9NQI0 724 aaKnown RBP25.3■■□□□ 1.64
PNKP-220ENST00000627232 ZRSR1Q15695 479 aaKnown RBP25.29■■□□□ 1.64
PNKP-220ENST00000627232 GRIPAP1Q4V328 841 aa25.29■■□□□ 1.64
PNKP-220ENST00000627232 OSBPL5Q9H0X9 879 aaPredicted RBP25.29■■□□□ 1.64
PNKP-220ENST00000627232 KCNH3Q9ULD8 1083 aa25.29■■□□□ 1.64
PNKP-220ENST00000627232 PLCB2Q00722 1185 aa25.28■■□□□ 1.64
PNKP-220ENST00000627232 DACT2Q5SW24 774 aa25.28■■□□□ 1.64
PNKP-220ENST00000627232 GALNT17Q6IS24 598 aa25.28■■□□□ 1.64
PNKP-220ENST00000627232 CEP95Q96GE4 821 aa25.28■■□□□ 1.64
PNKP-220ENST00000627232 BAZ2BQ9UIF8 2168 aaKnown RBP25.28■■□□□ 1.64
PNKP-220ENST00000627232 FAM205CA6NFA0 338 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 GOLGA6L19H0YKK7 550 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 PARP1P09874 1014 aaKnown RBP25.27■■□□□ 1.64
PNKP-220ENST00000627232 NLRP12P59046 1061 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 EARS2Q5JPH6 523 aaKnown RBP25.27■■□□□ 1.64
PNKP-220ENST00000627232 KRBA2Q6ZNG9 492 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 DAGLBQ8NCG7 672 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 CCDC148Q8NFR7 591 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 BPIFA3Q9BQP9 254 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 SERPINB13Q9UIV8 391 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 TUBE1Q9UJT0 475 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 PSME4Q14997 1843 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 GREB1LQ9C091 1923 aaPredicted RBP25.27■■□□□ 1.64
PNKP-220ENST00000627232 IGKV6D-41A0A0C4DH26 115 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 HLA-DOAP06340 250 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 KIAA2012Q0VF49 1180 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 FERMT2Q96AC1 680 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 EHD4Q9H223 541 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 EIF2AK3Q9NZJ5 1116 aaKnown RBP25.27■■□□□ 1.64
PNKP-220ENST00000627232 PCDHA4Q9UN74 947 aa25.27■■□□□ 1.64
PNKP-220ENST00000627232 KLRF2D3W0D1 207 aa25.26■■□□□ 1.63
PNKP-220ENST00000627232 TPM3P06753 285 aa25.26■■□□□ 1.63
PNKP-220ENST00000627232 ATP2B1P20020 1258 aa25.26■■□□□ 1.63
PNKP-220ENST00000627232 SLC35G1Q2M3R5 365 aa25.26■■□□□ 1.63
PNKP-220ENST00000627232 TTC38Q5R3I4 469 aa25.26■■□□□ 1.63
PNKP-220ENST00000627232 SARM1Q6SZW1 724 aa25.26■■□□□ 1.63
PNKP-220ENST00000627232 BLIDQ8IZY5 108 aa25.26■■□□□ 1.63
PNKP-220ENST00000627232 HOOK1Q9UJC3 728 aaKnown RBP25.26■■□□□ 1.63
PNKP-220ENST00000627232 CYTH3O43739 400 aa25.25■■□□□ 1.63
PNKP-220ENST00000627232 NPM3O75607 178 aaKnown RBP25.25■■□□□ 1.63
PNKP-220ENST00000627232 BAG6P46379 1132 aa25.25■■□□□ 1.63
PNKP-220ENST00000627232 ARHGAP30Q7Z6I6 1101 aaPredicted RBP25.25■■□□□ 1.63
PNKP-220ENST00000627232 KCNQ5Q9NR82 932 aa25.25■■□□□ 1.63
PNKP-220ENST00000627232 MTMR4Q9NYA4 1195 aa25.25■■□□□ 1.63
PNKP-220ENST00000627232 VEGFAP15692 232 aaPredicted RBP25.24■■□□□ 1.63
PNKP-220ENST00000627232 PIBF1Q8WXW3 757 aa25.24■■□□□ 1.63
PNKP-220ENST00000627232 ERCC4Q92889 916 aaPredicted RBP25.24■■□□□ 1.63
PNKP-220ENST00000627232 BECN2A8MW95 431 aa25.23■■□□□ 1.63
PNKP-220ENST00000627232 GOLGA6L6A8MZA4 724 aa25.23■■□□□ 1.63
PNKP-220ENST00000627232 ZNF500O60304 480 aaPredicted RBP25.23■■□□□ 1.63
PNKP-220ENST00000627232 SF3B2Q13435 895 aaKnown RBP25.23■■□□□ 1.63
PNKP-220ENST00000627232 PPP4R3BQ5MIZ7 849 aa25.23■■□□□ 1.63
PNKP-220ENST00000627232 PLA2G4DQ86XP0 818 aa25.23■■□□□ 1.63
PNKP-220ENST00000627232 DHX40Q8IX18 779 aaKnown RBP25.23■■□□□ 1.63
PNKP-220ENST00000627232 CNNM3Q8NE01 707 aa25.23■■□□□ 1.63
PNKP-220ENST00000627232 IDI2Q9BXS1 227 aa25.23■■□□□ 1.63
PNKP-220ENST00000627232 BARHL2Q9NY43 387 aa25.23■■□□□ 1.63
PNKP-220ENST00000627232 ZNF219Q9P2Y4 722 aaPredicted RBP25.23■■□□□ 1.63
PNKP-220ENST00000627232 SERPINA10Q9UK55 444 aa25.23■■□□□ 1.63
PNKP-220ENST00000627232 STXBP3O00186 592 aa25.22■■□□□ 1.63
PNKP-220ENST00000627232 AKR1B1P15121 316 aa25.22■■□□□ 1.63
PNKP-220ENST00000627232 ZNF75DP51815 510 aa25.22■■□□□ 1.63
PNKP-220ENST00000627232 ATP2C1P98194 919 aaPredicted RBP25.22■■□□□ 1.63
PNKP-220ENST00000627232 GRIN1Q05586 938 aa25.22■■□□□ 1.63
PNKP-220ENST00000627232 LONRF3Q496Y0 759 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms