RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 FAM43AQ8N2R8 423 aa22.5■■□□□ 1.19
SQSTM1-216ENST00000626660 VCPKMTQ9H867 229 aa22.5■■□□□ 1.19
SQSTM1-216ENST00000626660 EMILIN3Q9NT22 766 aa22.5■■□□□ 1.19
SQSTM1-216ENST00000626660 SYNPO2Q9UMS6 1093 aa22.5■■□□□ 1.19
SQSTM1-216ENST00000626660 PDHXO00330 501 aa22.49■■□□□ 1.19
SQSTM1-216ENST00000626660 CA12O43570 354 aa22.49■■□□□ 1.19
SQSTM1-216ENST00000626660 RAD21O60216 631 aa22.49■■□□□ 1.19
SQSTM1-216ENST00000626660 TSGA10IPQ3SY00 556 aa22.49■■□□□ 1.19
SQSTM1-216ENST00000626660 GPAT2Q6NUI2 795 aa22.49■■□□□ 1.19
SQSTM1-216ENST00000626660 LPAR1Q92633 364 aa22.49■■□□□ 1.19
SQSTM1-216ENST00000626660 MKL1Q969V6 931 aa22.49■■□□□ 1.19
SQSTM1-216ENST00000626660 TTC14Q96N46 770 aa22.49■■□□□ 1.19
SQSTM1-216ENST00000626660 ZSCAN10Q96SZ4 725 aaPredicted RBP22.49■■□□□ 1.19
SQSTM1-216ENST00000626660 RNF186Q9NXI6 227 aa22.49■■□□□ 1.19
SQSTM1-216ENST00000626660 SLC45A1Q9Y2W3 748 aa22.49■■□□□ 1.19
SQSTM1-216ENST00000626660 TRPA1O75762 1119 aa22.48■■□□□ 1.19
SQSTM1-216ENST00000626660 DGKZQ13574 1117 aa22.48■■□□□ 1.19
SQSTM1-216ENST00000626660 SART3Q15020 963 aaKnown RBP22.48■■□□□ 1.19
SQSTM1-216ENST00000626660 TAF1CQ15572 869 aaPredicted RBP22.48■■□□□ 1.19
SQSTM1-216ENST00000626660 TREML2Q5T2D2 321 aa22.48■■□□□ 1.19
SQSTM1-216ENST00000626660 RASEFQ8IZ41 740 aa22.48■■□□□ 1.19
SQSTM1-216ENST00000626660 LRRC47Q8N1G4 583 aaKnown RBP22.48■■□□□ 1.19
SQSTM1-216ENST00000626660 NKX2-3Q8TAU0 364 aa22.48■■□□□ 1.19
SQSTM1-216ENST00000626660 KCNB2Q92953 911 aa22.48■■□□□ 1.19
SQSTM1-216ENST00000626660 ZKSCAN3Q9BRR0 538 aa22.48■■□□□ 1.19
SQSTM1-216ENST00000626660 SAGE1Q9NXZ1 904 aa22.48■■□□□ 1.19
SQSTM1-216ENST00000626660 PNMA3Q9UL41 463 aa22.48■■□□□ 1.19
SQSTM1-216ENST00000626660 ERICH2A1L162 156 aa22.47■■□□□ 1.19
SQSTM1-216ENST00000626660 TOP1P11387 765 aaKnown RBP22.47■■□□□ 1.19
SQSTM1-216ENST00000626660 VCAM1P19320 739 aa22.47■■□□□ 1.19
SQSTM1-216ENST00000626660 CYB5R4Q7L1T6 521 aa22.47■■□□□ 1.19
SQSTM1-216ENST00000626660 DGKHQ86XP1 1220 aa22.47■■□□□ 1.19
SQSTM1-216ENST00000626660 MB21D2Q8IYB1 491 aaPredicted RBP22.47■■□□□ 1.19
SQSTM1-216ENST00000626660 OSBPP22059 807 aa22.46■■□□□ 1.19
SQSTM1-216ENST00000626660 MCM5P33992 734 aa22.46■■□□□ 1.19
SQSTM1-216ENST00000626660 NOVP48745 357 aa22.46■■□□□ 1.19
SQSTM1-216ENST00000626660 IRX3P78415 501 aaPredicted RBP22.46■■□□□ 1.19
SQSTM1-216ENST00000626660 SPICE1Q8N0Z3 855 aa22.46■■□□□ 1.19
SQSTM1-216ENST00000626660 NEK1Q96PY6 1258 aa22.46■■□□□ 1.19
SQSTM1-216ENST00000626660 PARK7Q99497 189 aaKnown RBP22.46■■□□□ 1.19
SQSTM1-216ENST00000626660 ZFYVE28Q9HCC9 887 aa22.46■■□□□ 1.19
SQSTM1-216ENST00000626660 SNX14Q9Y5W7 946 aa22.46■■□□□ 1.19
SQSTM1-216ENST00000626660 TNKSO95271 1327 aa22.46■■□□□ 1.19
SQSTM1-216ENST00000626660 USP17L15C9J2P7 530 aa22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 USP17L13C9JLJ4 530 aa22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 USP17L11C9JVI0 530 aa22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 USP17L18D6R9N7 530 aa22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 USP17L22D6RA61 530 aa22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 USP17L17D6RBQ6 530 aa22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 USP17L19D6RCP7 530 aa22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 USP17L20D6RJB6 530 aa22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 F5H6K3 240 aa22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 IFIT3O14879 490 aaKnown RBP22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 HMGB1P09429 215 aaKnown RBP22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 HSPA8P11142 646 aaKnown RBP22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 HOXA7P31268 230 aaPredicted RBP22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 KLRC3Q07444 240 aa22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 USP17L24Q0WX57 530 aa22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 GMCL1P1Q8NEA9 526 aa22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 TMEM47Q9BQJ4 181 aa22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 RPAP3Q9H6T3 665 aaPredicted RBP22.45■■□□□ 1.18
SQSTM1-216ENST00000626660 WDR46O15213 610 aaKnown RBP22.44■■□□□ 1.18
SQSTM1-216ENST00000626660 PRC1O43663 620 aa22.44■■□□□ 1.18
SQSTM1-216ENST00000626660 SEC24BO95487 1268 aa22.44■■□□□ 1.18
SQSTM1-216ENST00000626660 NDUFB10O96000 172 aa22.44■■□□□ 1.18
SQSTM1-216ENST00000626660 PSMA5P28066 241 aa22.44■■□□□ 1.18
SQSTM1-216ENST00000626660 RCSD1Q6JBY9 416 aa22.44■■□□□ 1.18
SQSTM1-216ENST00000626660 ENAHQ8N8S7 591 aaPredicted RBP22.44■■□□□ 1.18
SQSTM1-216ENST00000626660 ABHD8Q96I13 439 aa22.44■■□□□ 1.18
SQSTM1-216ENST00000626660 TANGO6Q9C0B7 1094 aa22.44■■□□□ 1.18
SQSTM1-216ENST00000626660 KAT14Q9H8E8 782 aa22.44■■□□□ 1.18
SQSTM1-216ENST00000626660 CRHR2Q13324 411 aa22.43■■□□□ 1.18
SQSTM1-216ENST00000626660 ADCK5Q3MIX3 580 aa22.43■■□□□ 1.18
SQSTM1-216ENST00000626660 TMEM67Q5HYA8 995 aa22.43■■□□□ 1.18
SQSTM1-216ENST00000626660 KIAA1755Q5JYT7 1200 aa22.43■■□□□ 1.18
SQSTM1-216ENST00000626660 IFIT1BQ5T764 474 aaKnown RBP22.43■■□□□ 1.18
SQSTM1-216ENST00000626660 SLFN13Q68D06 897 aa22.43■■□□□ 1.18
SQSTM1-216ENST00000626660 CHST3Q7LGC8 479 aa22.43■■□□□ 1.18
SQSTM1-216ENST00000626660 SMCR8Q8TEV9 937 aaPredicted RBP22.43■■□□□ 1.18
SQSTM1-216ENST00000626660 ANKS1AQ92625 1134 aa22.43■■□□□ 1.18
SQSTM1-216ENST00000626660 JAKMIP1Q96N16 626 aaKnown RBP22.43■■□□□ 1.18
SQSTM1-216ENST00000626660 MTA3Q9BTC8 594 aa22.43■■□□□ 1.18
SQSTM1-216ENST00000626660 CFHR5Q9BXR6 569 aa22.43■■□□□ 1.18
SQSTM1-216ENST00000626660 ASCC2Q9H1I8 757 aaPredicted RBP22.43■■□□□ 1.18
SQSTM1-216ENST00000626660 ISY1Q9ULR0 285 aaKnown RBP22.43■■□□□ 1.18
SQSTM1-216ENST00000626660 TBC1D8O95759 1140 aa22.42■■□□□ 1.18
SQSTM1-216ENST00000626660 ANTXR2P58335 489 aa22.42■■□□□ 1.18
SQSTM1-216ENST00000626660 WTAPQ15007 396 aa22.42■■□□□ 1.18
SQSTM1-216ENST00000626660 CATSPERGQ6ZRH7 1159 aa22.42■■□□□ 1.18
SQSTM1-216ENST00000626660 TMEM87BQ96K49 555 aa22.42■■□□□ 1.18
SQSTM1-216ENST00000626660 WDR19Q8NEZ3 1342 aa22.41■■□□□ 1.18
SQSTM1-216ENST00000626660 CYP2C8P10632 490 aa22.41■■□□□ 1.18
SQSTM1-216ENST00000626660 SEC23AQ15436 765 aa22.41■■□□□ 1.18
SQSTM1-216ENST00000626660 FAM83BQ5T0W9 1011 aa22.41■■□□□ 1.18
SQSTM1-216ENST00000626660 BLOC1S2Q6QNY1 142 aa22.41■■□□□ 1.18
SQSTM1-216ENST00000626660 DHX32Q7L7V1 743 aaKnown RBP22.41■■□□□ 1.18
SQSTM1-216ENST00000626660 GMCL1Q96IK5 515 aa22.41■■□□□ 1.18
SQSTM1-216ENST00000626660 UPF2Q9HAU5 1272 aaKnown RBP22.41■■□□□ 1.18
SQSTM1-216ENST00000626660 MTMR7Q9Y216 660 aa22.41■■□□□ 1.18
SQSTM1-216ENST00000626660 SLC1A4P43007 532 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms