RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 TFAP4Q01664 338 aa14.68□□□□□ -0.06
CCDC88A-214ENST00000621814 NR1I3Q14994 352 aa14.68□□□□□ -0.06
CCDC88A-214ENST00000621814 ANKIB1Q9P2G1 1089 aa14.68□□□□□ -0.06
CCDC88A-214ENST00000621814 AKR1B15C9JRZ8 316 aaPredicted RBP14.68□□□□□ -0.06
CCDC88A-214ENST00000621814 CUL4BQ13620 913 aa14.68□□□□□ -0.06
CCDC88A-214ENST00000621814 TEX35Q5T0J7 233 aa14.68□□□□□ -0.06
CCDC88A-214ENST00000621814 KRT222Q8N1A0 295 aa14.68□□□□□ -0.06
CCDC88A-214ENST00000621814 GOLGB1Q14789 3259 aaKnown RBP14.68□□□□□ -0.06
CCDC88A-214ENST00000621814 TAF1P21675 1872 aa14.68□□□□□ -0.06
CCDC88A-214ENST00000621814 STX10O60499 249 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 SCG2P13521 617 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 KCNJ6P48051 423 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 TBX2Q13207 712 aaPredicted RBP14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 SPATA1Q5VX52 437 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 STAG2Q8N3U4 1231 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 TRIML1Q8N9V2 468 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 CCDC12Q8WUD4 166 aaPredicted RBP14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 KAT14Q9H8E8 782 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 PARP3Q9Y6F1 533 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 ANKRD36CQ5JPF3 1778 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 SEC31AO94979 1220 aaKnown RBP14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 CALM1P0DP23 149 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 CALM2P0DP24 149 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 CALM3P0DP25 149 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 CASP14P31944 242 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 DPYDQ12882 1025 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 CPVLQ9H3G5 476 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 MRPL44Q9H9J2 332 aaKnown RBP14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 MKNK2Q9HBH9 465 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 STX8Q9UNK0 236 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 MORC2Q9Y6X9 1032 aaPredicted RBP14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 DDX60Q8IY21 1712 aaKnown RBP14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 PHLPP2Q6ZVD8 1323 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 CNTNAP5Q8WYK1 1306 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 USP17L3A6NCW0 530 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 USP17L4A6NCW7 530 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 GNPATO15228 680 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 GOLGA8HP0CJ92 632 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 ERCC5P28715 1186 aaPredicted RBP14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 PPP2R5BQ15173 497 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 SF3B3Q15393 1217 aaKnown RBP14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 DIXDC1Q155Q3 683 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 NPY5RQ15761 445 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 USP17L1Q7RTZ2 530 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 FERMT2Q96AC1 680 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 MTA3Q9BTC8 594 aa14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 SAP30BPQ9UHR5 308 aaKnown RBP14.67□□□□□ -0.06
CCDC88A-214ENST00000621814 PP2D1A8MPX8 630 aa14.66□□□□□ -0.06
CCDC88A-214ENST00000621814 ZPR1O75312 459 aa14.66□□□□□ -0.06
CCDC88A-214ENST00000621814 IL17AQ16552 155 aa14.66□□□□□ -0.06
CCDC88A-214ENST00000621814 IQUBQ8NA54 791 aa14.66□□□□□ -0.06
CCDC88A-214ENST00000621814 SLC44A5Q8NCS7 719 aa14.66□□□□□ -0.06
CCDC88A-214ENST00000621814 CDCA7Q9BWT1 371 aaPredicted RBP14.66□□□□□ -0.06
CCDC88A-214ENST00000621814 NID2Q14112 1375 aa14.66□□□□□ -0.06
CCDC88A-214ENST00000621814 N4BP3O15049 544 aa14.66□□□□□ -0.06
CCDC88A-214ENST00000621814 RCAN1P53805 252 aa14.66□□□□□ -0.06
CCDC88A-214ENST00000621814 FILIP1LQ4L180 1135 aa14.66□□□□□ -0.06
CCDC88A-214ENST00000621814 FBXO33Q7Z6M2 555 aa14.66□□□□□ -0.06
CCDC88A-214ENST00000621814 TAB2Q9NYJ8 693 aa14.66□□□□□ -0.06
CCDC88A-214ENST00000621814 ECM29Q5VYK3 1845 aa14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 A0A1B0GTH6 734 aa14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 PPP1R3GB7ZBB8 358 aa14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 MYO1BO43795 1136 aa14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 CLEC4GQ6UXB4 293 aa14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 RASGRP2Q7LDG7 609 aa14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 SMARCC1Q92922 1105 aaPredicted RBP14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 GTPBP4Q9BZE4 634 aaKnown RBP14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 BAZ2AQ9UIF9 1905 aaKnown RBP14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 DOT1LQ8TEK3 1739 aa14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 DDAH1O94760 285 aa14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 HEATR3Q7Z4Q2 680 aa14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 ELOA2Q8IYF1 753 aaPredicted RBP14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 SPATA20Q8TB22 786 aa14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 GDAQ9Y2T3 454 aa14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 MYH2Q9UKX2 1941 aa14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 STRCQ7RTU9 1775 aa14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 XDHP47989 1333 aa14.65□□□□□ -0.06
CCDC88A-214ENST00000621814 RAD9BQ6WBX8 426 aa14.64□□□□□ -0.07
CCDC88A-214ENST00000621814 GSDMAQ96QA5 445 aa14.64□□□□□ -0.07
CCDC88A-214ENST00000621814 NUP88Q99567 741 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-214ENST00000621814 CCDC175P0C221 793 aa14.64□□□□□ -0.07
CCDC88A-214ENST00000621814 ATP2C1P98194 919 aaPredicted RBP14.64□□□□□ -0.07
CCDC88A-214ENST00000621814 TMCO3Q6UWJ1 677 aa14.64□□□□□ -0.07
CCDC88A-214ENST00000621814 VAT1LQ9HCJ6 419 aa14.64□□□□□ -0.07
CCDC88A-214ENST00000621814 PUF60Q9UHX1 559 aaKnown RBP14.64□□□□□ -0.07
CCDC88A-214ENST00000621814 MYH14Q7Z406 1995 aaKnown RBP14.64□□□□□ -0.07
CCDC88A-214ENST00000621814 PPP2R3AQ06190 1150 aa14.64□□□□□ -0.07
CCDC88A-214ENST00000621814 PNMA1Q8ND90 353 aa14.64□□□□□ -0.07
CCDC88A-214ENST00000621814 TGFBRAP1Q8WUH2 860 aa14.64□□□□□ -0.07
CCDC88A-214ENST00000621814 TNFRSF25Q93038 417 aa14.64□□□□□ -0.07
CCDC88A-214ENST00000621814 MTRQ99707 1265 aa14.64□□□□□ -0.07
CCDC88A-214ENST00000621814 FAM205AQ6ZU69 1335 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 LRP5O75197 1615 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 CICQ96RK0 1608 aaPredicted RBP14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 CCDC194A0A1B0GVG4 234 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 TSPY3P0CV98 308 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 TSPY8P0CW00 308 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 STAT6P42226 847 aa14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 FXR1P51114 621 aaKnown RBP eCLIP14.63□□□□□ -0.07
CCDC88A-214ENST00000621814 PFKFB3Q16875 520 aaPredicted RBP14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms