RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 USP17L20D6RJB6 530 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 EPB41L2O43491 1005 aaKnown RBP12.11□□□□□ -0.47
VPS11-208ENST00000621676 EEF2P13639 858 aaKnown RBP12.11□□□□□ -0.47
VPS11-208ENST00000621676 HOXA13P31271 388 aaPredicted RBP12.11□□□□□ -0.47
VPS11-208ENST00000621676 LIFRP42702 1097 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 USP17L24Q0WX57 530 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 GRM1Q13255 1194 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 SLC35G1Q2M3R5 365 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 USP17L6PQ6QN14 398 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 SASS6Q6UVJ0 657 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 SMYD4Q8IYR2 804 aaPredicted RBP12.11□□□□□ -0.47
VPS11-208ENST00000621676 AGXT2Q9BYV1 514 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 FBXO28Q9NVF7 368 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 TMOD2Q9NZR1 351 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 MYH3P11055 1940 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 DDNO94850 711 aaPredicted RBP12.11□□□□□ -0.47
VPS11-208ENST00000621676 PARP1P09874 1014 aaKnown RBP12.11□□□□□ -0.47
VPS11-208ENST00000621676 PRKCSHP14314 528 aaPredicted RBP12.11□□□□□ -0.47
VPS11-208ENST00000621676 SLC1A4P43007 532 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 PNOCQ13519 176 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 SYAP1Q96A49 352 aaPredicted RBP12.11□□□□□ -0.47
VPS11-208ENST00000621676 KIFC2Q96AC6 838 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 OSBPL5Q9H0X9 879 aaPredicted RBP12.11□□□□□ -0.47
VPS11-208ENST00000621676 BLZF1Q9H2G9 400 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 PODXL2Q9NZ53 605 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 CCDC196A0A1B0GTZ2 297 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 POLR2DO15514 142 aaKnown RBP12.11□□□□□ -0.47
VPS11-208ENST00000621676 STX17P56962 302 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 KIAA2012Q0VF49 1180 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 DNAJC18Q9H819 358 aa12.11□□□□□ -0.47
VPS11-208ENST00000621676 IRS2Q9Y4H2 1338 aa12.1□□□□□ -0.47
VPS11-208ENST00000621676 SSBP05455 408 aaKnown RBP eCLIP12.1□□□□□ -0.47
VPS11-208ENST00000621676 IFNAR1P17181 557 aa12.1□□□□□ -0.47
VPS11-208ENST00000621676 MRE11P49959 708 aa12.1□□□□□ -0.47
VPS11-208ENST00000621676 FMR1Q06787 632 aaKnown RBP eCLIP12.1□□□□□ -0.473e-6■■□□□ 13.5
VPS11-208ENST00000621676 PKN1Q16512 942 aa12.1□□□□□ -0.47
VPS11-208ENST00000621676 MAP3K11Q16584 847 aa12.1□□□□□ -0.47
VPS11-208ENST00000621676 CCDC183Q5T5S1 534 aa12.1□□□□□ -0.47
VPS11-208ENST00000621676 SLF2Q8IX21 1173 aa12.1□□□□□ -0.47
VPS11-208ENST00000621676 DEXIO95424 95 aa12.1□□□□□ -0.47
VPS11-208ENST00000621676 NOSTRINQ8IVI9 506 aa12.1□□□□□ -0.47
VPS11-208ENST00000621676 LINC00301Q8NCQ3 95 aa12.1□□□□□ -0.47
VPS11-208ENST00000621676 FMNL1O95466 1100 aaPredicted RBP12.09□□□□□ -0.47
VPS11-208ENST00000621676 EAPPQ56P03 285 aaPredicted RBP12.09□□□□□ -0.47
VPS11-208ENST00000621676 L1TD1Q5T7N2 865 aaKnown RBP12.09□□□□□ -0.47
VPS11-208ENST00000621676 LRSAM1Q6UWE0 723 aa12.09□□□□□ -0.47
VPS11-208ENST00000621676 SGMS1Q86VZ5 419 aa12.09□□□□□ -0.47
VPS11-208ENST00000621676 MICALL2Q8IY33 904 aa12.09□□□□□ -0.47
VPS11-208ENST00000621676 LLPHQ9BRT6 129 aaKnown RBP12.09□□□□□ -0.47
VPS11-208ENST00000621676 ZSCAN16Q9H4T2 348 aaPredicted RBP12.09□□□□□ -0.47
VPS11-208ENST00000621676 FAM205AQ6ZU69 1335 aa12.09□□□□□ -0.47
VPS11-208ENST00000621676 TMEM232C9JQI7 657 aa12.09□□□□□ -0.47
VPS11-208ENST00000621676 TOB1P50616 345 aaPredicted RBP12.09□□□□□ -0.47
VPS11-208ENST00000621676 ZKSCAN4Q969J2 545 aaPredicted RBP12.09□□□□□ -0.47
VPS11-208ENST00000621676 DDX60Q8IY21 1712 aaKnown RBP12.09□□□□□ -0.47
VPS11-208ENST00000621676 CCDC194A0A1B0GVG4 234 aa12.09□□□□□ -0.47
VPS11-208ENST00000621676 BECN2A8MW95 431 aa12.09□□□□□ -0.47
VPS11-208ENST00000621676 GMPSP49915 693 aaPredicted RBP12.09□□□□□ -0.47
VPS11-208ENST00000621676 ICA1Q05084 483 aa12.09□□□□□ -0.47
VPS11-208ENST00000621676 RASA3Q14644 834 aa12.09□□□□□ -0.47
VPS11-208ENST00000621676 STRIP1Q5VSL9 837 aa12.09□□□□□ -0.47
VPS11-208ENST00000621676 TRMT44Q8IYL2 757 aaKnown RBP12.09□□□□□ -0.47
VPS11-208ENST00000621676 TMTC2Q8N394 836 aa12.09□□□□□ -0.47
VPS11-208ENST00000621676 UPF1Q92900 1129 aaKnown RBP eCLIP12.09□□□□□ -0.47
VPS11-208ENST00000621676 TTC12Q9H892 705 aaPredicted RBP12.09□□□□□ -0.47
VPS11-208ENST00000621676 SEC63Q9UGP8 760 aaKnown RBP12.09□□□□□ -0.47
VPS11-208ENST00000621676 MKRN1Q9UHC7 482 aaKnown RBP12.09□□□□□ -0.47
VPS11-208ENST00000621676 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.09□□□□□ -0.47
VPS11-208ENST00000621676 THSD7AQ9UPZ6 1657 aa12.08□□□□□ -0.47
VPS11-208ENST00000621676 SMCO2A6NFE2 343 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 TRIM75PA6NK02 468 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 PES1O00541 588 aaKnown RBP12.08□□□□□ -0.48
VPS11-208ENST00000621676 MMP1P03956 469 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 SCG2P13521 617 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 PFKFB1P16118 471 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 XBP1P17861 261 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 EPS15P42566 896 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 PTGDRQ13258 359 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 WWC2Q6AWC2 1192 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 TMTC3Q6ZXV5 915 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 MOB2Q70IA6 237 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 FILIP1Q7Z7B0 1213 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 BMP2KQ9NSY1 1161 aaPredicted RBP12.08□□□□□ -0.48
VPS11-208ENST00000621676 RFX7Q2KHR2 1363 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 NFKBIEO00221 500 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 WNT10BO00744 389 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 ZNF202O95125 648 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 PLCG2P16885 1265 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 SHMT1P34896 483 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 SP4Q02446 784 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 TYRO3Q06418 890 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 TTLL12Q14166 644 aaPredicted RBP12.08□□□□□ -0.48
VPS11-208ENST00000621676 C7orf43Q8WVR3 580 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 TBC1D5Q92609 795 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 KLRG2A4D1S0 409 aaPredicted RBP12.08□□□□□ -0.48
VPS11-208ENST00000621676 SYKP43405 635 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 PRELPP51888 382 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 GPR162Q16538 588 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 LONRF3Q496Y0 759 aa12.08□□□□□ -0.48
VPS11-208ENST00000621676 SOGA3Q5TF21 947 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms