RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 DIP2BQ9P265 1576 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 MNAT1P51948 309 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 FERMT2Q96AC1 680 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 BCCIPQ9P287 314 aaKnown RBP eCLIP14.16□□□□□ -0.14
LIG1-221ENST00000613670 GOLGA6L10A6NI86 522 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 EBAG9O00559 213 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 N4BP1O75113 896 aaKnown RBP14.16□□□□□ -0.14
LIG1-221ENST00000613670 KRT18P05783 430 aaKnown RBP14.16□□□□□ -0.14
LIG1-221ENST00000613670 VSNL1P62760 191 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 IFT81Q8WYA0 676 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 PANX2Q96RD6 677 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 ATG3Q9NT62 314 aa14.16□□□□□ -0.14
LIG1-221ENST00000613670 TACC1O75410 805 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 KIF5BP33176 963 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 TUBB4BP68371 445 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 KRT31Q15323 416 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 HLFQ16534 295 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 CCDC93Q567U6 631 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 LIFRP42702 1097 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 CCDC152Q4G0S7 254 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 ANKRD13CQ8N6S4 541 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 ALS2CR12Q96Q35 445 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 HDAC6Q9UBN7 1215 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 NIP7Q9Y221 180 aaKnown RBP eCLIP14.15□□□□□ -0.14
LIG1-221ENST00000613670 GOLGA6CA6NDK9 693 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 TUBBP07437 444 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 GOLGA6DP0CG33 693 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 FXR1P51114 621 aaKnown RBP eCLIP14.15□□□□□ -0.14
LIG1-221ENST00000613670 DZIP1Q86YF9 867 aaKnown RBP14.15□□□□□ -0.14
LIG1-221ENST00000613670 RASGRP4Q8TDF6 673 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 GSDMAQ96QA5 445 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 NOC4LQ9BVI4 516 aaKnown RBP14.15□□□□□ -0.14
LIG1-221ENST00000613670 GOLGA6AQ9NYA3 693 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 FBXO2Q9UK22 296 aaPredicted RBP14.15□□□□□ -0.14
LIG1-221ENST00000613670 GDAQ9Y2T3 454 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 C3P01024 1663 aa14.15□□□□□ -0.14
LIG1-221ENST00000613670 CLSTN1O94985 981 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 CYP27A1Q02318 531 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 TUBB2AQ13885 445 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 RASGRF1Q13972 1273 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 GSPT2Q8IYD1 628 aaKnown RBP14.14□□□□□ -0.15
LIG1-221ENST00000613670 IGDCC4Q8TDY8 1250 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 CCDC51Q96ER9 411 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 PYM1Q9BRP8 204 aaKnown RBP14.14□□□□□ -0.15
LIG1-221ENST00000613670 TUBB2BQ9BVA1 445 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 SEC31BQ9NQW1 1179 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 GOLGA6BA6NDN3 693 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 USP17L12C9JPN9 530 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 USP17L21D6R901 530 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 RNF40O75150 1001 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 MAATS1Q7Z4T9 603 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 IPO4Q8TEX9 1081 aaKnown RBP14.14□□□□□ -0.15
LIG1-221ENST00000613670 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.14□□□□□ -0.15
LIG1-221ENST00000613670 HPSEQ9Y251 543 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 HSF2BPO75031 334 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 ZPR1O75312 459 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 PDE4DQ08499 809 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 ZNF444Q8N0Y2 327 aaPredicted RBP14.14□□□□□ -0.15
LIG1-221ENST00000613670 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.14□□□□□ -0.15
LIG1-221ENST00000613670 FUT8Q9BYC5 575 aa14.14□□□□□ -0.15
LIG1-221ENST00000613670 PLEKHA8P1O95397 391 aa14.13□□□□□ -0.15
LIG1-221ENST00000613670 GYG1P46976 350 aa14.13□□□□□ -0.15
LIG1-221ENST00000613670 FAM207AQ9NSI2 230 aaPredicted RBP14.13□□□□□ -0.15
LIG1-221ENST00000613670 MCM9Q9NXL9 1143 aa14.13□□□□□ -0.15
LIG1-221ENST00000613670 A0A0U1RQJ8 604 aa14.13□□□□□ -0.15
LIG1-221ENST00000613670 RDXP35241 583 aaKnown RBP14.13□□□□□ -0.15
LIG1-221ENST00000613670 TRIM14Q14142 442 aa14.13□□□□□ -0.15
LIG1-221ENST00000613670 LETM2Q2VYF4 491 aa14.13□□□□□ -0.15
LIG1-221ENST00000613670 CADPS2Q86UW7 1296 aa14.13□□□□□ -0.15
LIG1-221ENST00000613670 ATRIPQ8WXE1 791 aa14.13□□□□□ -0.15
LIG1-221ENST00000613670 GPKOWQ92917 476 aaPredicted RBP eCLIP14.13□□□□□ -0.151e-9■■■■■ 32.6
LIG1-221ENST00000613670 TRIM10Q9UDY6 481 aa14.13□□□□□ -0.15
LIG1-221ENST00000613670 ERVV-2B6SEH9 535 aa14.13□□□□□ -0.15
LIG1-221ENST00000613670 FAM71BQ8TC56 605 aa14.13□□□□□ -0.15
LIG1-221ENST00000613670 TAF4BQ92750 862 aa14.13□□□□□ -0.15
LIG1-221ENST00000613670 ACSBG1Q96GR2 724 aa14.13□□□□□ -0.15
LIG1-221ENST00000613670 LUC7LQ9NQ29 371 aaKnown RBP14.13□□□□□ -0.15
LIG1-221ENST00000613670 TFR2Q9UP52 801 aa14.13□□□□□ -0.15
LIG1-221ENST00000613670 TRIM49BA6NDI0 452 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 RPN1P04843 607 aaKnown RBP14.12□□□□□ -0.15
LIG1-221ENST00000613670 CCDC40Q4G0X9 1142 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 TYW1BQ6NUM6 668 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 GIGYF2Q6Y7W6 1299 aaKnown RBP14.12□□□□□ -0.15
LIG1-221ENST00000613670 TMEM51Q9NW97 253 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 FBXO3Q9UK99 471 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 B4DLN1 442 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 H3BQF6 201 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 ATP2C2O75185 946 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 CUL4BQ13620 913 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 NR1I3Q14994 352 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 NLRP10Q86W26 655 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 UIMC1Q96RL1 719 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 ZSCAN10Q96SZ4 725 aaPredicted RBP14.12□□□□□ -0.15
LIG1-221ENST00000613670 PNKPQ96T60 521 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 CHP1Q99653 195 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 AATFQ9NY61 560 aaKnown RBP eCLIP14.12□□□□□ -0.15
LIG1-221ENST00000613670 SOS2Q07890 1332 aaPredicted RBP14.12□□□□□ -0.15
LIG1-221ENST00000613670 CPDO75976 1380 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 NDUFA10O95299 355 aa14.12□□□□□ -0.15
LIG1-221ENST00000613670 CALM1P0DP23 149 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms