RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 ZMYND10O75800 440 aa15.91■□□□□ 0.14
COL6A1-207ENST00000612273 UBXN1Q04323 297 aa15.91■□□□□ 0.14
COL6A1-207ENST00000612273 TPM1P09493 284 aa15.91■□□□□ 0.14
COL6A1-207ENST00000612273 GNAT2P19087 354 aa15.91■□□□□ 0.14
COL6A1-207ENST00000612273 SEC23AQ15436 765 aa15.91■□□□□ 0.14
COL6A1-207ENST00000612273 RASGRP2Q7LDG7 609 aa15.91■□□□□ 0.14
COL6A1-207ENST00000612273 GPR161Q8N6U8 529 aaKnown RBP15.91■□□□□ 0.14
COL6A1-207ENST00000612273 PCMTD1Q96MG8 357 aaPredicted RBP15.91■□□□□ 0.14
COL6A1-207ENST00000612273 PDE11AQ9HCR9 933 aa15.91■□□□□ 0.14
COL6A1-207ENST00000612273 GLI3P10071 1580 aa15.91■□□□□ 0.14
COL6A1-207ENST00000612273 PPP1R3GB7ZBB8 358 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 UIMC1Q96RL1 719 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 PNKPQ96T60 521 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 RNF26Q9BY78 433 aaPredicted RBP15.9■□□□□ 0.14
COL6A1-207ENST00000612273 HDAC6Q9UBN7 1215 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 ALS2Q96Q42 1657 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 MFAP3LO75121 409 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 PRDX5P30044 214 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 JAKMIP3Q5VZ66 844 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 RGS22Q8NE09 1264 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 NELFBQ8WX92 580 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 FAM53CQ9NYF3 392 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 VPS18Q9P253 973 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 XDHP47989 1333 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 SRGAP2O75044 1071 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 IL6STP40189 918 aaPredicted RBP15.9■□□□□ 0.14
COL6A1-207ENST00000612273 MRPS25P82663 173 aaKnown RBP15.9■□□□□ 0.14
COL6A1-207ENST00000612273 APTXQ7Z2E3 356 aaKnown RBP15.9■□□□□ 0.14
COL6A1-207ENST00000612273 CCDC102AQ96A19 550 aa15.9■□□□□ 0.14
COL6A1-207ENST00000612273 KIF1AQ12756 1690 aa15.89■□□□□ 0.13
COL6A1-207ENST00000612273 GOLGA6L9A6NEM1 432 aa15.89■□□□□ 0.13
COL6A1-207ENST00000612273 VGLL3A8MV65 326 aa15.89■□□□□ 0.13
COL6A1-207ENST00000612273 H3BQF6 201 aa15.89■□□□□ 0.13
COL6A1-207ENST00000612273 GOLGA8HP0CJ92 632 aa15.89■□□□□ 0.13
COL6A1-207ENST00000612273 ERCC5P28715 1186 aaPredicted RBP15.89■□□□□ 0.13
COL6A1-207ENST00000612273 ERVK-24P63145 666 aa15.89■□□□□ 0.13
COL6A1-207ENST00000612273 ERFEQ4G0M1 354 aa15.89■□□□□ 0.13
COL6A1-207ENST00000612273 FKBP15Q5T1M5 1219 aa15.89■□□□□ 0.13
COL6A1-207ENST00000612273 FCHSD1Q86WN1 690 aa15.89■□□□□ 0.13
COL6A1-207ENST00000612273 MTRQ99707 1265 aa15.89■□□□□ 0.13
COL6A1-207ENST00000612273 PHF20Q9BVI0 1012 aa15.89■□□□□ 0.13
COL6A1-207ENST00000612273 COL18A1P39060 1754 aa15.89■□□□□ 0.13
COL6A1-207ENST00000612273 TROAPQ12815 778 aa15.89■□□□□ 0.13
COL6A1-207ENST00000612273 CCDC87Q9NVE4 849 aa15.89■□□□□ 0.13
COL6A1-207ENST00000612273 CTAGE9A4FU28 777 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 TUBB4AP04350 444 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 CAVIN4Q5BKX8 364 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 NT5DC1Q5TFE4 455 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 IQUBQ8NA54 791 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 CELF1Q92879 486 aaKnown RBP15.88■□□□□ 0.13
COL6A1-207ENST00000612273 DYNLL2Q96FJ2 89 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 CYP2C19P33261 490 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 TXLNAP40222 546 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 IL17AQ16552 155 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 CTR9Q6PD62 1173 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 ANKRD18AQ8IVF6 992 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 NOA1Q8NC60 698 aaKnown RBP15.88■□□□□ 0.13
COL6A1-207ENST00000612273 FUT8Q9BYC5 575 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 VAT1LQ9HCJ6 419 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 MCM9Q9NXL9 1143 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 TNS2Q63HR2 1409 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 AKAP11Q9UKA4 1901 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 KCNQ2O43526 872 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 USP17L8P0C7I0 530 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 STAT6P42226 847 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 STAG2Q8N3U4 1231 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 TRIML1Q8N9V2 468 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 ZNF579Q8NAF0 562 aaKnown RBP15.88■□□□□ 0.13
COL6A1-207ENST00000612273 ZNF384Q8TF68 577 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 DRC1Q96MC2 740 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 ABCB6Q9NP58 842 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 GNL3LQ9NVN8 582 aaKnown RBP15.88■□□□□ 0.13
COL6A1-207ENST00000612273 STX8Q9UNK0 236 aa15.88■□□□□ 0.13
COL6A1-207ENST00000612273 KCNJ18B7U540 433 aa15.87■□□□□ 0.13
COL6A1-207ENST00000612273 PRCPP42785 496 aa15.87■□□□□ 0.13
COL6A1-207ENST00000612273 ITPK1Q13572 414 aa15.87■□□□□ 0.13
COL6A1-207ENST00000612273 KCNJ12Q14500 433 aa15.87■□□□□ 0.13
COL6A1-207ENST00000612273 SRGAP1Q7Z6B7 1085 aa15.87■□□□□ 0.13
COL6A1-207ENST00000612273 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.87■□□□□ 0.13
COL6A1-207ENST00000612273 PMS1P54277 932 aaKnown RBP15.87■□□□□ 0.13
COL6A1-207ENST00000612273 EIF5P55010 431 aaKnown RBP15.87■□□□□ 0.13
COL6A1-207ENST00000612273 FAM193AP78312 1265 aa15.87■□□□□ 0.13
COL6A1-207ENST00000612273 PAK1Q13153 545 aa15.87■□□□□ 0.13
COL6A1-207ENST00000612273 INTS5Q6P9B9 1019 aaKnown RBP15.87■□□□□ 0.13
COL6A1-207ENST00000612273 RSRC2Q7L4I2 434 aaKnown RBP15.87■□□□□ 0.13
COL6A1-207ENST00000612273 RABGGTAQ92696 567 aa15.87■□□□□ 0.13
COL6A1-207ENST00000612273 HPS3Q969F9 1004 aa15.87■□□□□ 0.13
COL6A1-207ENST00000612273 NUTM2BA6NNL0 878 aaPredicted RBP15.86■□□□□ 0.13
COL6A1-207ENST00000612273 NUTM2EB1AL46 878 aaPredicted RBP15.86■□□□□ 0.13
COL6A1-207ENST00000612273 ANKRD65E5RJM6 399 aa15.86■□□□□ 0.13
COL6A1-207ENST00000612273 COPB1P53618 953 aaKnown RBP15.86■□□□□ 0.13
COL6A1-207ENST00000612273 HEATR3Q7Z4Q2 680 aa15.86■□□□□ 0.13
COL6A1-207ENST00000612273 SLC44A5Q8NCS7 719 aa15.86■□□□□ 0.13
COL6A1-207ENST00000612273 PSMB7Q99436 277 aa15.86■□□□□ 0.13
COL6A1-207ENST00000612273 RIOK1Q9BRS2 568 aaKnown RBP15.86■□□□□ 0.13
COL6A1-207ENST00000612273 CDC23Q9UJX2 597 aa15.86■□□□□ 0.13
COL6A1-207ENST00000612273 VSNL1P62760 191 aa15.86■□□□□ 0.13
COL6A1-207ENST00000612273 FUT2Q10981 343 aa15.86■□□□□ 0.13
COL6A1-207ENST00000612273 INF2Q27J81 1249 aa15.86■□□□□ 0.13
COL6A1-207ENST00000612273 GSDMAQ96QA5 445 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms