RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 DDRGK1Q96HY6 314 aa7.63□□□□□ -1.19
CUX1-220ENST00000607092 DBNDD2Q9BQY9 259 aa7.63□□□□□ -1.19
CUX1-220ENST00000607092 ARHGEF10LQ9HCE6 1279 aa7.63□□□□□ -1.19
CUX1-220ENST00000607092 SAP30BPQ9UHR5 308 aaKnown RBP7.63□□□□□ -1.19
CUX1-220ENST00000607092 NOP58Q9Y2X3 529 aaKnown RBP7.63□□□□□ -1.19
CUX1-220ENST00000607092 ALPK3Q96L96 1907 aa7.62□□□□□ -1.19
CUX1-220ENST00000607092 PNMA6EA0A0J9YXQ4 647 aa7.62□□□□□ -1.19
CUX1-220ENST00000607092 SPDYE16A6NNV3 312 aaPredicted RBP7.62□□□□□ -1.19
CUX1-220ENST00000607092 CCER2I3L3R5 266 aa7.62□□□□□ -1.19
CUX1-220ENST00000607092 RIOK3O14730 519 aaKnown RBP7.62□□□□□ -1.19
CUX1-220ENST00000607092 FCER1AP12319 257 aa7.62□□□□□ -1.19
CUX1-220ENST00000607092 RTP1P59025 263 aa7.62□□□□□ -1.19
CUX1-220ENST00000607092 TMEM179Q6ZVK1 233 aa7.62□□□□□ -1.19
CUX1-220ENST00000607092 RNF180Q86T96 592 aa7.62□□□□□ -1.19
CUX1-220ENST00000607092 CCDC17Q96LX7 622 aa7.62□□□□□ -1.19
CUX1-220ENST00000607092 TANGO6Q9C0B7 1094 aa7.62□□□□□ -1.19
CUX1-220ENST00000607092 SPATC1LQ9H0A9 340 aa7.62□□□□□ -1.19
CUX1-220ENST00000607092 RPAP3Q9H6T3 665 aaPredicted RBP7.62□□□□□ -1.19
CUX1-220ENST00000607092 ATP11BQ9Y2G3 1177 aa7.62□□□□□ -1.19
CUX1-220ENST00000607092 TACC3Q9Y6A5 838 aa7.62□□□□□ -1.19
CUX1-220ENST00000607092 UNC80Q8N2C7 3258 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 MAGEB6P1A0A0J9YX57 407 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 MPHOSPH10O00566 681 aaKnown RBP7.61□□□□□ -1.19
CUX1-220ENST00000607092 PRR29P0C7W0 189 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 RARBP10826 455 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 MS4A1P11836 297 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 CYBAP13498 195 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 ADORA2AP29274 412 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 CYP2C19P33261 490 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 ATN1P54259 1190 aaPredicted RBP7.61□□□□□ -1.19
CUX1-220ENST00000607092 KCTD2Q14681 263 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 SNX17Q15036 470 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 ZYXQ15942 572 aaKnown RBP7.61□□□□□ -1.19
CUX1-220ENST00000607092 SLC39A5Q6ZMH5 540 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 ADGRA1Q86SQ6 560 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 MSL3Q8N5Y2 521 aaKnown RBP7.61□□□□□ -1.19
CUX1-220ENST00000607092 MAGEB6Q8N7X4 407 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 MOV10L1Q9BXT6 1211 aaKnown RBP7.61□□□□□ -1.19
CUX1-220ENST00000607092 CHMP4BQ9H444 224 aaKnown RBP7.61□□□□□ -1.19
CUX1-220ENST00000607092 PRDM5Q9NQX1 630 aaPredicted RBP7.61□□□□□ -1.19
CUX1-220ENST00000607092 MCM9Q9NXL9 1143 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 DBNLQ9UJU6 430 aaKnown RBP7.61□□□□□ -1.19
CUX1-220ENST00000607092 DIS3Q9Y2L1 958 aaKnown RBP7.61□□□□□ -1.19
CUX1-220ENST00000607092 PLXNB2O15031 1838 aa7.61□□□□□ -1.19
CUX1-220ENST00000607092 ZNF236Q9UL36 1845 aa7.6□□□□□ -1.19
CUX1-220ENST00000607092 WDR46O15213 610 aaKnown RBP7.6□□□□□ -1.19
CUX1-220ENST00000607092 CNMDO75829 334 aa7.6□□□□□ -1.19
CUX1-220ENST00000607092 ERCC3P19447 782 aa7.6□□□□□ -1.19
CUX1-220ENST00000607092 DYNLL1P63167 89 aaKnown RBP7.6□□□□□ -1.19
CUX1-220ENST00000607092 JAG1P78504 1218 aa7.6□□□□□ -1.19
CUX1-220ENST00000607092 MIGA1Q8NAN2 632 aa7.6□□□□□ -1.19
CUX1-220ENST00000607092 MAFAQ8NHW3 353 aaPredicted RBP7.6□□□□□ -1.19
CUX1-220ENST00000607092 ACER1Q8TDN7 264 aa7.6□□□□□ -1.19
CUX1-220ENST00000607092 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.6□□□□□ -1.19
CUX1-220ENST00000607092 CLUAP1Q96AJ1 413 aa7.6□□□□□ -1.19
CUX1-220ENST00000607092 COL25A1Q9BXS0 654 aaPredicted RBP7.6□□□□□ -1.19
CUX1-220ENST00000607092 PIH1D3Q9NQM4 214 aaKnown RBP7.6□□□□□ -1.19
CUX1-220ENST00000607092 BTBD7Q9P203 1132 aa7.6□□□□□ -1.19
CUX1-220ENST00000607092 CNPY2Q9Y2B0 182 aa7.6□□□□□ -1.19
CUX1-220ENST00000607092 TMX2Q9Y320 296 aa7.6□□□□□ -1.19
CUX1-220ENST00000607092 PIEZO1Q92508 2521 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 ROBO3Q96MS0 1386 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 FOCADQ5VW36 1801 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 MROH7Q68CQ1 1323 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 DNAH12Q6ZR08 3092 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 DCDC2CA8MYV0 355 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 HMMRO75330 724 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 FLOT1O75955 427 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 IGHA2P01877 340 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 RAG1P15918 1043 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 SHMT1P34896 483 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 GABPAQ06546 454 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 PLS1Q14651 629 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 SEPT2Q15019 361 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 GJC2Q5T442 439 aaPredicted RBP7.59□□□□□ -1.19
CUX1-220ENST00000607092 SLC9C2Q5TAH2 1124 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 ZSCAN25Q6NSZ9 544 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 NCAPG2Q86XI2 1143 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 CLASRPQ8N2M8 674 aaKnown RBP7.59□□□□□ -1.19
CUX1-220ENST00000607092 NUP133Q8WUM0 1156 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 FAM212AQ96EL1 285 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 TOX2Q96NM4 488 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 GUCD1Q96NT3 240 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 CDX2Q99626 313 aaPredicted RBP7.59□□□□□ -1.19
CUX1-220ENST00000607092 RIOK1Q9BRS2 568 aaKnown RBP7.59□□□□□ -1.19
CUX1-220ENST00000607092 TSEN34Q9BSV6 310 aaKnown RBP7.59□□□□□ -1.19
CUX1-220ENST00000607092 DDX24Q9GZR7 859 aaKnown RBP eCLIP7.59□□□□□ -1.192e-10■■■□□ 18.9
CUX1-220ENST00000607092 CCDC8Q9H0W5 538 aaPredicted RBP7.59□□□□□ -1.19
CUX1-220ENST00000607092 SEMA6BQ9H3T3 888 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 SPC25Q9HBM1 224 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 XPNPEP3Q9NQH7 507 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 ATP8A2Q9NTI2 1148 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 FLRT1Q9NZU1 646 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 PHF24Q9UPV7 400 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 NDUFB9Q9Y6M9 179 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 SIPA1L1O43166 1804 aa7.59□□□□□ -1.19
CUX1-220ENST00000607092 LAMA2P24043 3122 aaKnown RBP7.58□□□□□ -1.2
CUX1-220ENST00000607092 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.58□□□□□ -1.2
CUX1-220ENST00000607092 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.58□□□□□ -1.2
CUX1-220ENST00000607092 MOXD2PA6NHM9 499 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms