RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 BRAPQ7Z569 592 aa20.44■□□□□ 0.86
SHKBP1-224ENST00000600718 RTN4Q9NQC3 1192 aaKnown RBP20.44■□□□□ 0.86
SHKBP1-224ENST00000600718 CNTNAP5Q8WYK1 1306 aa20.44■□□□□ 0.86
SHKBP1-224ENST00000600718 MYH8P13535 1937 aa20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 UBE2Q2LH0YL09 131 aa20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 PARP1P09874 1014 aaKnown RBP20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 XBP1P17861 261 aa20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 PKN1Q16512 942 aa20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 KIF4BQ2VIQ3 1234 aa20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 STAG2Q8N3U4 1231 aa20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 TMEM39BQ9GZU3 492 aa20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 SCAND2PQ9GZW5 306 aaPredicted RBP20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 GDPD2Q9HCC8 539 aa20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 NYAP2Q9P242 653 aa20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 PGAP2Q9UHJ9 254 aa20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 CFAP45Q9UL16 551 aa20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 DDX49Q9Y6V7 483 aaKnown RBP20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 EGFRP00533 1210 aa20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 SMARCA1P28370 1054 aa20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 KIF23Q02241 960 aaPredicted RBP20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 TBC1D10BQ4KMP7 808 aaPredicted RBP20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 ZNF396Q96N95 335 aaPredicted RBP20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 CABP5Q9NP86 173 aa20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 DICER1Q9UPY3 1922 aaKnown RBP20.43■□□□□ 0.86
SHKBP1-224ENST00000600718 KLHL40Q2TBA0 621 aa20.42■□□□□ 0.86
SHKBP1-224ENST00000600718 MKL1Q969V6 931 aa20.42■□□□□ 0.86
SHKBP1-224ENST00000600718 GPRC5DQ9NZD1 345 aa20.42■□□□□ 0.86
SHKBP1-224ENST00000600718 FIBPO43427 364 aa20.41■□□□□ 0.86
SHKBP1-224ENST00000600718 MAP3K10Q02779 954 aa20.41■□□□□ 0.86
SHKBP1-224ENST00000600718 RASA3Q14644 834 aa20.41■□□□□ 0.86
SHKBP1-224ENST00000600718 SAFBQ15424 915 aaKnown RBP eCLIP20.41■□□□□ 0.86
SHKBP1-224ENST00000600718 GREB1LQ9C091 1923 aaPredicted RBP20.41■□□□□ 0.86
SHKBP1-224ENST00000600718 TFIP11Q9UBB9 837 aaKnown RBP20.41■□□□□ 0.86
SHKBP1-224ENST00000600718 MTMR7Q9Y216 660 aa20.41■□□□□ 0.86
SHKBP1-224ENST00000600718 KLRF2D3W0D1 207 aa20.41■□□□□ 0.86
SHKBP1-224ENST00000600718 MMP1P03956 469 aa20.41■□□□□ 0.86
SHKBP1-224ENST00000600718 LRRC47Q8N1G4 583 aaKnown RBP20.41■□□□□ 0.86
SHKBP1-224ENST00000600718 RNF181Q9P0P0 153 aa20.41■□□□□ 0.86
SHKBP1-224ENST00000600718 MBD3O95983 291 aa20.4■□□□□ 0.86
SHKBP1-224ENST00000600718 SNHG28P0DPA3 235 aa20.4■□□□□ 0.86
SHKBP1-224ENST00000600718 PDHBP11177 359 aa20.4■□□□□ 0.86
SHKBP1-224ENST00000600718 ASPRV1Q53RT3 343 aa20.4■□□□□ 0.86
SHKBP1-224ENST00000600718 USP17L2Q6R6M4 530 aa20.4■□□□□ 0.86
SHKBP1-224ENST00000600718 CLEC10AQ8IUN9 316 aa20.4■□□□□ 0.86
SHKBP1-224ENST00000600718 SPZ1Q9BXG8 430 aa20.4■□□□□ 0.86
SHKBP1-224ENST00000600718 SBF1O95248 1867 aa20.4■□□□□ 0.86
SHKBP1-224ENST00000600718 ELP1O95163 1332 aa20.39■□□□□ 0.86
SHKBP1-224ENST00000600718 USP17L5A8MUK1 530 aa20.39■□□□□ 0.86
SHKBP1-224ENST00000600718 GDF11O95390 407 aa20.39■□□□□ 0.86
SHKBP1-224ENST00000600718 SCG2P13521 617 aa20.39■□□□□ 0.86
SHKBP1-224ENST00000600718 EEF2P13639 858 aaKnown RBP20.39■□□□□ 0.86
SHKBP1-224ENST00000600718 U2AF2P26368 475 aaKnown RBP eCLIP20.39■□□□□ 0.86
SHKBP1-224ENST00000600718 ATP2B2Q01814 1243 aa20.39■□□□□ 0.86
SHKBP1-224ENST00000600718 GNL2Q13823 731 aaKnown RBP20.39■□□□□ 0.86
SHKBP1-224ENST00000600718 SEPT2Q15019 361 aa20.39■□□□□ 0.86
SHKBP1-224ENST00000600718 PFKFB3Q16875 520 aaPredicted RBP20.39■□□□□ 0.86
SHKBP1-224ENST00000600718 HACL1Q9UJ83 578 aa20.39■□□□□ 0.86
SHKBP1-224ENST00000600718 hCG_1642624A0A1W2PR95 340 aa20.39■□□□□ 0.85
SHKBP1-224ENST00000600718 GH2P01242 217 aa20.39■□□□□ 0.85
SHKBP1-224ENST00000600718 KIF28PB7ZC32 967 aa20.38■□□□□ 0.85
SHKBP1-224ENST00000600718 GOLGA8HP0CJ92 632 aa20.38■□□□□ 0.85
SHKBP1-224ENST00000600718 UBE2HP62256 183 aa20.38■□□□□ 0.85
SHKBP1-224ENST00000600718 ICA1Q05084 483 aa20.38■□□□□ 0.85
SHKBP1-224ENST00000600718 RRP1BQ14684 758 aaKnown RBP20.38■□□□□ 0.85
SHKBP1-224ENST00000600718 LEO1Q8WVC0 666 aaPredicted RBP20.38■□□□□ 0.85
SHKBP1-224ENST00000600718 SPATA32Q96LK8 384 aa20.38■□□□□ 0.85
SHKBP1-224ENST00000600718 FOXP1Q9H334 677 aaPredicted RBP20.38■□□□□ 0.85
SHKBP1-224ENST00000600718 KCNJ14Q9UNX9 436 aa20.38■□□□□ 0.85
SHKBP1-224ENST00000600718 SHROOM1Q2M3G4 852 aaPredicted RBP20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 C9orf131Q5VYM1 1079 aa20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 SIAH1Q8IUQ4 282 aa20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 GPT2Q8TD30 523 aa20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 TEPSINQ96N21 525 aa20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 PHF20Q9BVI0 1012 aa20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 VPS54Q9P1Q0 977 aa20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 SYNPO2Q9UMS6 1093 aa20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 CYTH3O43739 400 aa20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 GADD45BO75293 160 aaPredicted RBP20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 JAG1P78504 1218 aa20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 MYSM1Q5VVJ2 828 aa20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 CDAN1Q8IWY9 1227 aa20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 DIS3L2Q8IYB7 885 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 SH3GLB2Q9NR46 395 aa20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 GOLGB1Q14789 3259 aaKnown RBP20.37■□□□□ 0.85
SHKBP1-224ENST00000600718 TCHHQ07283 1943 aa20.36■□□□□ 0.85
SHKBP1-224ENST00000600718 ZNF543Q08ER8 600 aa20.36■□□□□ 0.85
SHKBP1-224ENST00000600718 SLC35G1Q2M3R5 365 aa20.36■□□□□ 0.85
SHKBP1-224ENST00000600718 GPATCH4Q5T3I0 446 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-224ENST00000600718 MIGA2Q7L4E1 593 aa20.36■□□□□ 0.85
SHKBP1-224ENST00000600718 APOBEC3FQ8IUX4 373 aaKnown RBP20.36■□□□□ 0.85
SHKBP1-224ENST00000600718 RCOR1Q9UKL0 485 aa20.36■□□□□ 0.85
SHKBP1-224ENST00000600718 ASTN2O75129 1339 aaPredicted RBP20.36■□□□□ 0.85
SHKBP1-224ENST00000600718 DDNO94850 711 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-224ENST00000600718 EPS15P42566 896 aa20.35■□□□□ 0.85
SHKBP1-224ENST00000600718 RASGRP2Q7LDG7 609 aa20.35■□□□□ 0.85
SHKBP1-224ENST00000600718 FAM177A1Q8N128 213 aaPredicted RBP20.35■□□□□ 0.85
SHKBP1-224ENST00000600718 USP28Q96RU2 1077 aa20.35■□□□□ 0.85
SHKBP1-224ENST00000600718 DEFB129Q9H1M3 183 aa20.35■□□□□ 0.85
SHKBP1-224ENST00000600718 RIOX1Q9H6W3 641 aa20.35■□□□□ 0.85
SHKBP1-224ENST00000600718 RTEL1Q9NZ71 1219 aa20.35■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms