RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 DCTPP1Q9H773 170 aa11.77□□□□□ -0.53
VRK3-216ENST00000599342 HOXC10Q9NYD6 342 aa11.77□□□□□ -0.53
VRK3-216ENST00000599342 BTBD7Q9P203 1132 aa11.77□□□□□ -0.53
VRK3-216ENST00000599342 ARPP21Q9UBL0 812 aaPredicted RBP11.77□□□□□ -0.53
VRK3-216ENST00000599342 MYH7P12883 1935 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 CYP2D7A0A087X1C5 515 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 SLC15A5A6NIM6 579 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 FLOT1O75955 427 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 PTPREP23469 700 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 FXR1P51114 621 aaKnown RBP eCLIP11.76□□□□□ -0.53
VRK3-216ENST00000599342 ATP2B2Q01814 1243 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 CACNB2Q08289 660 aaPredicted RBP11.76□□□□□ -0.53
VRK3-216ENST00000599342 CCL14Q16627 93 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 MFSD14CQ5VZR4 134 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 CTR9Q6PD62 1173 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 CLEC10AQ8IUN9 316 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 MB21D1Q8N884 522 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 KBTBD3Q8NAB2 608 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 NBPF3Q9H094 633 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 C11orf49Q9H6J7 331 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 OGDHLQ9ULD0 1010 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 MYH8P13535 1937 aa11.76□□□□□ -0.53
VRK3-216ENST00000599342 WDR46O15213 610 aaKnown RBP11.75□□□□□ -0.53
VRK3-216ENST00000599342 ZFYP08048 801 aaPredicted RBP11.75□□□□□ -0.53
VRK3-216ENST00000599342 GRB14Q14449 540 aa11.75□□□□□ -0.53
VRK3-216ENST00000599342 PLS1Q14651 629 aa11.75□□□□□ -0.53
VRK3-216ENST00000599342 LRRFIP1Q32MZ4 808 aaKnown RBP11.75□□□□□ -0.53
VRK3-216ENST00000599342 TSHZ3Q63HK5 1081 aa11.75□□□□□ -0.53
VRK3-216ENST00000599342 SAMD1Q6SPF0 538 aaPredicted RBP11.75□□□□□ -0.53
VRK3-216ENST00000599342 SPICE1Q8N0Z3 855 aa11.75□□□□□ -0.53
VRK3-216ENST00000599342 APPBP2Q92624 585 aa11.75□□□□□ -0.53
VRK3-216ENST00000599342 SPATC1LQ9H0A9 340 aa11.75□□□□□ -0.53
VRK3-216ENST00000599342 VCPKMTQ9H867 229 aa11.75□□□□□ -0.53
VRK3-216ENST00000599342 KANSL2Q9H9L4 492 aa11.75□□□□□ -0.53
VRK3-216ENST00000599342 GOPCQ9HD26 462 aa11.75□□□□□ -0.53
VRK3-216ENST00000599342 RBM27Q9P2N5 1060 aaKnown RBP11.75□□□□□ -0.53
VRK3-216ENST00000599342 TMX2Q9Y320 296 aa11.75□□□□□ -0.53
VRK3-216ENST00000599342 BAZ2AQ9UIF9 1905 aaKnown RBP11.75□□□□□ -0.53
VRK3-216ENST00000599342 SMIM22K7EJ46 135 aa11.74□□□□□ -0.53
VRK3-216ENST00000599342 ERC2O15083 957 aa11.74□□□□□ -0.53
VRK3-216ENST00000599342 RAD21O60216 631 aa11.74□□□□□ -0.53
VRK3-216ENST00000599342 CCND3P30281 292 aaPredicted RBP11.74□□□□□ -0.53
VRK3-216ENST00000599342 KIAA1755Q5JYT7 1200 aa11.74□□□□□ -0.53
VRK3-216ENST00000599342 GIMAP6Q6P9H5 292 aa11.74□□□□□ -0.53
VRK3-216ENST00000599342 DPP9Q86TI2 863 aa11.74□□□□□ -0.53
VRK3-216ENST00000599342 C7orf61Q8IZ16 206 aa11.74□□□□□ -0.53
VRK3-216ENST00000599342 STRBPQ96SI9 672 aaKnown RBP11.74□□□□□ -0.53
VRK3-216ENST00000599342 MOV10L1Q9BXT6 1211 aaKnown RBP11.74□□□□□ -0.53
VRK3-216ENST00000599342 MKNK2Q9HBH9 465 aa11.74□□□□□ -0.53
VRK3-216ENST00000599342 ZBTB47Q9UFB7 747 aaPredicted RBP11.74□□□□□ -0.53
VRK3-216ENST00000599342 MINDY4BA8MYZ0 360 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 RNF113AO15541 343 aaKnown RBP11.73□□□□□ -0.53
VRK3-216ENST00000599342 GPAA1O43292 621 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 STRNO43815 780 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 HOXC6P09630 235 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 EEF2P13639 858 aaKnown RBP11.73□□□□□ -0.53
VRK3-216ENST00000599342 GNAT2P19087 354 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 ERCC3P19447 782 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 ADORA2AP29274 412 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 CNGA1P29973 690 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 DSG3P32926 999 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 TDO2P48775 406 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 TTC41PQ6P2S7 1318 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 NCAPG2Q86XI2 1143 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 SIAH1Q8IUQ4 282 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 STK11IPQ8N1F8 1099 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 SHCBP1Q8NEM2 672 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 OSBP2Q969R2 916 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 ATG4CQ96DT6 458 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 SLC5A4Q9NY91 659 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 FLRT1Q9NZU1 646 aa11.73□□□□□ -0.53
VRK3-216ENST00000599342 A0A0G2JMZ2 1700 aa11.72□□□□□ -0.53
VRK3-216ENST00000599342 GSG1L2A8MUP6 293 aa11.72□□□□□ -0.53
VRK3-216ENST00000599342 MSCO60682 206 aa11.72□□□□□ -0.53
VRK3-216ENST00000599342 APPP05067 770 aa11.72□□□□□ -0.53
VRK3-216ENST00000599342 MNX1P50219 401 aaPredicted RBP11.72□□□□□ -0.53
VRK3-216ENST00000599342 RRP1P56182 461 aaKnown RBP11.72□□□□□ -0.53
VRK3-216ENST00000599342 SBK1Q52WX2 424 aa11.72□□□□□ -0.53
VRK3-216ENST00000599342 NPLOC4Q8TAT6 608 aa11.72□□□□□ -0.53
VRK3-216ENST00000599342 FSD1Q9BTV5 496 aa11.72□□□□□ -0.53
VRK3-216ENST00000599342 MROH8Q9H579 483 aa11.72□□□□□ -0.53
VRK3-216ENST00000599342 ZNF287Q9HBT7 754 aa11.72□□□□□ -0.53
VRK3-216ENST00000599342 ROBO3Q96MS0 1386 aa11.71□□□□□ -0.53
VRK3-216ENST00000599342 PFASO15067 1338 aa11.71□□□□□ -0.53
VRK3-216ENST00000599342 A0A1W2PPC1 479 aa11.71□□□□□ -0.53
VRK3-216ENST00000599342 SLC25A27O95847 323 aa11.71□□□□□ -0.53
VRK3-216ENST00000599342 CYP2C19P33261 490 aa11.71□□□□□ -0.53
VRK3-216ENST00000599342 OLFML2BQ68BL8 750 aa11.71□□□□□ -0.53
VRK3-216ENST00000599342 LHX8Q68G74 356 aa11.71□□□□□ -0.53
VRK3-216ENST00000599342 ABRAQ8N0Z2 381 aa11.71□□□□□ -0.53
VRK3-216ENST00000599342 NACAP1Q9BZK3 213 aa11.71□□□□□ -0.53
VRK3-216ENST00000599342 PRO3102Q9H379 93 aa11.71□□□□□ -0.53
VRK3-216ENST00000599342 DDX20Q9UHI6 824 aaKnown RBP11.71□□□□□ -0.53
VRK3-216ENST00000599342 ZMYND8Q9ULU4 1186 aaPredicted RBP11.71□□□□□ -0.53
VRK3-216ENST00000599342 PCDHB15Q9Y5E8 787 aa11.71□□□□□ -0.53
VRK3-216ENST00000599342 ZNF236Q9UL36 1845 aa11.71□□□□□ -0.54
VRK3-216ENST00000599342 M0R2C6 588 aa11.7□□□□□ -0.54
VRK3-216ENST00000599342 FCER1AP12319 257 aa11.7□□□□□ -0.54
VRK3-216ENST00000599342 MX1P20591 662 aa11.7□□□□□ -0.54
VRK3-216ENST00000599342 RASA1P20936 1047 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms