RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 UBXN2AP68543 259 aa12.81□□□□□ -0.36
VRK3-214ENST00000598553 ICA1Q05084 483 aa12.81□□□□□ -0.36
VRK3-214ENST00000598553 ANKRD45Q5TZF3 282 aa12.81□□□□□ -0.36
VRK3-214ENST00000598553 EXOC6Q8TAG9 804 aa12.81□□□□□ -0.36
VRK3-214ENST00000598553 NPLOC4Q8TAT6 608 aa12.81□□□□□ -0.36
VRK3-214ENST00000598553 ATG4CQ96DT6 458 aa12.81□□□□□ -0.36
VRK3-214ENST00000598553 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.81□□□□□ -0.36
VRK3-214ENST00000598553 SWAP70Q9UH65 585 aa12.81□□□□□ -0.36
VRK3-214ENST00000598553 MCM3APO60318 1980 aa12.81□□□□□ -0.36
VRK3-214ENST00000598553 TTC41PQ6P2S7 1318 aa12.81□□□□□ -0.36
VRK3-214ENST00000598553 MINDY4BA8MYZ0 360 aa12.8□□□□□ -0.36
VRK3-214ENST00000598553 PRDM1O75626 825 aa12.8□□□□□ -0.36
VRK3-214ENST00000598553 HMGCRP04035 888 aa12.8□□□□□ -0.36
VRK3-214ENST00000598553 CCND3P30281 292 aaPredicted RBP12.8□□□□□ -0.36
VRK3-214ENST00000598553 USP14P54578 494 aa12.8□□□□□ -0.36
VRK3-214ENST00000598553 ZMYM1Q5SVZ6 1142 aa12.8□□□□□ -0.36
VRK3-214ENST00000598553 MAP3K21Q5TCX8 1036 aa12.8□□□□□ -0.36
VRK3-214ENST00000598553 ZSCAN25Q6NSZ9 544 aa12.8□□□□□ -0.36
VRK3-214ENST00000598553 LBX2Q6XYB7 198 aa12.8□□□□□ -0.36
VRK3-214ENST00000598553 NKX2-3Q8TAU0 364 aa12.8□□□□□ -0.36
VRK3-214ENST00000598553 NUP88Q99567 741 aaPredicted RBP12.8□□□□□ -0.36
VRK3-214ENST00000598553 CRISPLD2Q9H0B8 497 aa12.8□□□□□ -0.36
VRK3-214ENST00000598553 VCPKMTQ9H867 229 aa12.8□□□□□ -0.36
VRK3-214ENST00000598553 INCENPQ9NQS7 918 aa12.8□□□□□ -0.36
VRK3-214ENST00000598553 TMX2Q9Y320 296 aa12.8□□□□□ -0.36
VRK3-214ENST00000598553 H0YGN5 161 aa12.79□□□□□ -0.36
VRK3-214ENST00000598553 FARP2O94887 1054 aaPredicted RBP12.79□□□□□ -0.36
VRK3-214ENST00000598553 CENPBP07199 599 aaPredicted RBP12.79□□□□□ -0.36
VRK3-214ENST00000598553 ATP2B2Q01814 1243 aa12.79□□□□□ -0.36
VRK3-214ENST00000598553 HDAC1Q13547 482 aaPredicted RBP12.79□□□□□ -0.36
VRK3-214ENST00000598553 SBK1Q52WX2 424 aa12.79□□□□□ -0.36
VRK3-214ENST00000598553 VPS53Q5VIR6 699 aa12.79□□□□□ -0.36
VRK3-214ENST00000598553 SAMD1Q6SPF0 538 aaPredicted RBP12.79□□□□□ -0.36
VRK3-214ENST00000598553 RASGRP2Q7LDG7 609 aa12.79□□□□□ -0.36
VRK3-214ENST00000598553 PLEKHH3Q7Z736 793 aa12.79□□□□□ -0.36
VRK3-214ENST00000598553 GPATCH3Q96I76 525 aa12.79□□□□□ -0.36
VRK3-214ENST00000598553 NUDT12Q9BQG2 462 aa12.79□□□□□ -0.36
VRK3-214ENST00000598553 FSD1Q9BTV5 496 aa12.79□□□□□ -0.36
VRK3-214ENST00000598553 MOV10L1Q9BXT6 1211 aaKnown RBP12.79□□□□□ -0.36
VRK3-214ENST00000598553 TANGO6Q9C0B7 1094 aa12.79□□□□□ -0.36
VRK3-214ENST00000598553 LNPKQ9C0E8 428 aa12.79□□□□□ -0.36
VRK3-214ENST00000598553 ARPP21Q9UBL0 812 aaPredicted RBP12.79□□□□□ -0.36
VRK3-214ENST00000598553 RABGAP1Q9Y3P9 1069 aa12.79□□□□□ -0.36
VRK3-214ENST00000598553 LAMA4Q16363 1823 aa12.78□□□□□ -0.36
VRK3-214ENST00000598553 LCTP09848 1927 aa12.78□□□□□ -0.36
VRK3-214ENST00000598553 IGKV6D-41A0A0C4DH26 115 aa12.78□□□□□ -0.36
VRK3-214ENST00000598553 GLRX3O76003 335 aaKnown RBP12.78□□□□□ -0.36
VRK3-214ENST00000598553 PRKAR2AP13861 404 aaKnown RBP12.78□□□□□ -0.36
VRK3-214ENST00000598553 MAPK4P31152 587 aa12.78□□□□□ -0.36
VRK3-214ENST00000598553 DSG3P32926 999 aa12.78□□□□□ -0.36
VRK3-214ENST00000598553 PDE1AP54750 535 aa12.78□□□□□ -0.36
VRK3-214ENST00000598553 CACNB2Q08289 660 aaPredicted RBP12.78□□□□□ -0.36
VRK3-214ENST00000598553 WDR78Q5VTH9 848 aa12.78□□□□□ -0.36
VRK3-214ENST00000598553 IFNL3Q8IZI9 196 aa12.78□□□□□ -0.36
VRK3-214ENST00000598553 A0A0D9SFI3 127 aa12.77□□□□□ -0.37
VRK3-214ENST00000598553 PTPREP23469 700 aa12.77□□□□□ -0.37
VRK3-214ENST00000598553 MAP2K5Q13163 448 aa12.77□□□□□ -0.37
VRK3-214ENST00000598553 FAM83BQ5T0W9 1011 aa12.77□□□□□ -0.37
VRK3-214ENST00000598553 B4GALNT3Q6L9W6 998 aa12.77□□□□□ -0.37
VRK3-214ENST00000598553 TRPV1Q8NER1 839 aa12.77□□□□□ -0.37
VRK3-214ENST00000598553 SOCS4Q8WXH5 440 aa12.77□□□□□ -0.37
VRK3-214ENST00000598553 PAWRQ96IZ0 340 aaKnown RBP12.77□□□□□ -0.37
VRK3-214ENST00000598553 CCDC17Q96LX7 622 aa12.77□□□□□ -0.37
VRK3-214ENST00000598553 FAM227BQ96M60 508 aa12.77□□□□□ -0.37
VRK3-214ENST00000598553 APBA2Q99767 749 aa12.77□□□□□ -0.37
VRK3-214ENST00000598553 ARHGEF10LQ9HCE6 1279 aa12.77□□□□□ -0.37
VRK3-214ENST00000598553 COBLO75128 1261 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 FLOT1O75955 427 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 IGHA2P01877 340 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 ZFYP08048 801 aaPredicted RBP12.76□□□□□ -0.37
VRK3-214ENST00000598553 ZKSCAN1P17029 563 aaPredicted RBP12.76□□□□□ -0.37
VRK3-214ENST00000598553 ERCC3P19447 782 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 TDO2P48775 406 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 IRX6P78412 446 aaPredicted RBP12.76□□□□□ -0.37
VRK3-214ENST00000598553 CTDSPL2Q05D32 466 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 GRB14Q14449 540 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 COG2Q14746 738 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 TMEM132BQ14DG7 1078 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 FAM47AQ5JRC9 791 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 ZNF589Q86UQ0 364 aaPredicted RBP12.76□□□□□ -0.37
VRK3-214ENST00000598553 SMC5Q8IY18 1101 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 LRRC47Q8N1G4 583 aaKnown RBP12.76□□□□□ -0.37
VRK3-214ENST00000598553 REPS2Q8NFH8 660 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 GTF3C2Q8WUA4 911 aaPredicted RBP12.76□□□□□ -0.37
VRK3-214ENST00000598553 CHMP4CQ96CF2 233 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 SPATC1LQ9H0A9 340 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 STAP2Q9UGK3 403 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 COLQQ9Y215 455 aaPredicted RBP12.76□□□□□ -0.37
VRK3-214ENST00000598553 RPTORQ8N122 1335 aa12.76□□□□□ -0.37
VRK3-214ENST00000598553 PATL2C9JE40 543 aaKnown RBP12.75□□□□□ -0.37
VRK3-214ENST00000598553 PFASO15067 1338 aa12.75□□□□□ -0.37
VRK3-214ENST00000598553 ERC2O15083 957 aa12.75□□□□□ -0.37
VRK3-214ENST00000598553 WDR46O15213 610 aaKnown RBP12.75□□□□□ -0.37
VRK3-214ENST00000598553 TFRCP02786 760 aaKnown RBP12.75□□□□□ -0.37
VRK3-214ENST00000598553 APPP05067 770 aa12.75□□□□□ -0.37
VRK3-214ENST00000598553 XRCC5P13010 732 aaKnown RBP12.75□□□□□ -0.37
VRK3-214ENST00000598553 CYP2C19P33261 490 aa12.75□□□□□ -0.37
VRK3-214ENST00000598553 RGS2P41220 211 aa12.75□□□□□ -0.37
VRK3-214ENST00000598553 GIMAP6Q6P9H5 292 aa12.75□□□□□ -0.37
VRK3-214ENST00000598553 CEP95Q96GE4 821 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms