RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 TMX2Q9Y320 296 aa12.62□□□□□ -0.39
LIG1-213ENST00000596672 RABGAP1Q9Y3P9 1069 aa12.62□□□□□ -0.39
LIG1-213ENST00000596672 GPAA1O43292 621 aa12.61□□□□□ -0.39
LIG1-213ENST00000596672 HMGCRP04035 888 aa12.61□□□□□ -0.39
LIG1-213ENST00000596672 EEF2P13639 858 aaKnown RBP12.61□□□□□ -0.39
LIG1-213ENST00000596672 UBXN2AP68543 259 aa12.61□□□□□ -0.39
LIG1-213ENST00000596672 CACNB2Q08289 660 aaPredicted RBP12.61□□□□□ -0.39
LIG1-213ENST00000596672 SBK1Q52WX2 424 aa12.61□□□□□ -0.39
LIG1-213ENST00000596672 CCDC129Q6ZRS4 1044 aa12.61□□□□□ -0.39
LIG1-213ENST00000596672 TMEM179Q6ZVK1 233 aa12.61□□□□□ -0.39
LIG1-213ENST00000596672 PLEKHH3Q7Z736 793 aa12.61□□□□□ -0.39
LIG1-213ENST00000596672 NPLOC4Q8TAT6 608 aa12.61□□□□□ -0.39
LIG1-213ENST00000596672 NKX2-3Q8TAU0 364 aa12.61□□□□□ -0.39
LIG1-213ENST00000596672 APPBP2Q92624 585 aa12.61□□□□□ -0.39
LIG1-213ENST00000596672 INCENPQ9NQS7 918 aa12.61□□□□□ -0.39
LIG1-213ENST00000596672 FBXO28Q9NVF7 368 aa12.61□□□□□ -0.39
LIG1-213ENST00000596672 SWAP70Q9UH65 585 aa12.61□□□□□ -0.39
LIG1-213ENST00000596672 FRMPD3Q5JV73 1810 aa12.6□□□□□ -0.39
LIG1-213ENST00000596672 IGKV6D-41A0A0C4DH26 115 aa12.6□□□□□ -0.39
LIG1-213ENST00000596672 FARP2O94887 1054 aaPredicted RBP12.6□□□□□ -0.39
LIG1-213ENST00000596672 IGHDP01880 384 aa12.6□□□□□ -0.39
LIG1-213ENST00000596672 XRCC5P13010 732 aaKnown RBP12.6□□□□□ -0.39
LIG1-213ENST00000596672 CCND3P30281 292 aaPredicted RBP12.6□□□□□ -0.39
LIG1-213ENST00000596672 USP14P54578 494 aa12.6□□□□□ -0.39
LIG1-213ENST00000596672 HABP4Q5JVS0 413 aaKnown RBP12.6□□□□□ -0.39
LIG1-213ENST00000596672 ZMYM1Q5SVZ6 1142 aa12.6□□□□□ -0.39
LIG1-213ENST00000596672 TRPV1Q8NER1 839 aa12.6□□□□□ -0.39
LIG1-213ENST00000596672 ATG4CQ96DT6 458 aa12.6□□□□□ -0.39
LIG1-213ENST00000596672 MOV10L1Q9BXT6 1211 aaKnown RBP12.6□□□□□ -0.39
LIG1-213ENST00000596672 COLQQ9Y215 455 aaPredicted RBP12.6□□□□□ -0.39
LIG1-213ENST00000596672 MYH4Q9Y623 1939 aa12.6□□□□□ -0.39
LIG1-213ENST00000596672 ROBO3Q96MS0 1386 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 COBLO75128 1261 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 PRDM1O75626 825 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 PRKAR2AP13861 404 aaKnown RBP12.59□□□□□ -0.39
LIG1-213ENST00000596672 PTPREP23469 700 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 MAPK4P31152 587 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 DSG3P32926 999 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 ICA1Q05084 483 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 MAP2K5Q13163 448 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 HDAC1Q13547 482 aaPredicted RBP12.59□□□□□ -0.39
LIG1-213ENST00000596672 ANKRD45Q5TZF3 282 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 LHX8Q68G74 356 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 PAWRQ96IZ0 340 aaKnown RBP12.59□□□□□ -0.39
LIG1-213ENST00000596672 NUP88Q99567 741 aaPredicted RBP12.59□□□□□ -0.39
LIG1-213ENST00000596672 NUDT12Q9BQG2 462 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 PRO3102Q9H379 93 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 VCPKMTQ9H867 229 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 STAP2Q9UGK3 403 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 ADAMTS5Q9UNA0 930 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 TTC41PQ6P2S7 1318 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 RPTORQ8N122 1335 aa12.59□□□□□ -0.39
LIG1-213ENST00000596672 MINDY4BA8MYZ0 360 aa12.58□□□□□ -0.4
LIG1-213ENST00000596672 TFRCP02786 760 aaKnown RBP12.58□□□□□ -0.4
LIG1-213ENST00000596672 MX1P20591 662 aa12.58□□□□□ -0.4
LIG1-213ENST00000596672 GRB14Q14449 540 aa12.58□□□□□ -0.4
LIG1-213ENST00000596672 COG2Q14746 738 aa12.58□□□□□ -0.4
LIG1-213ENST00000596672 TMEM132BQ14DG7 1078 aa12.58□□□□□ -0.4
LIG1-213ENST00000596672 VPS53Q5VIR6 699 aa12.58□□□□□ -0.4
LIG1-213ENST00000596672 ZSCAN25Q6NSZ9 544 aa12.58□□□□□ -0.4
LIG1-213ENST00000596672 IFNL3Q8IZI9 196 aa12.58□□□□□ -0.4
LIG1-213ENST00000596672 REPS2Q8NFH8 660 aa12.58□□□□□ -0.4
LIG1-213ENST00000596672 EXOC6Q8TAG9 804 aa12.58□□□□□ -0.4
LIG1-213ENST00000596672 CCDC17Q96LX7 622 aa12.58□□□□□ -0.4
LIG1-213ENST00000596672 HOXC6P09630 235 aa12.57□□□□□ -0.4
LIG1-213ENST00000596672 PDE1AP54750 535 aa12.57□□□□□ -0.4
LIG1-213ENST00000596672 GIMAP6Q6P9H5 292 aa12.57□□□□□ -0.4
LIG1-213ENST00000596672 TANGO6Q9C0B7 1094 aa12.57□□□□□ -0.4
LIG1-213ENST00000596672 SPATC1LQ9H0A9 340 aa12.57□□□□□ -0.4
LIG1-213ENST00000596672 OGDHLQ9ULD0 1010 aa12.57□□□□□ -0.4
LIG1-213ENST00000596672 PFASO15067 1338 aa12.57□□□□□ -0.4
LIG1-213ENST00000596672 ZNF236Q9UL36 1845 aa12.56□□□□□ -0.4
LIG1-213ENST00000596672 SLC15A5A6NIM6 579 aa12.56□□□□□ -0.4
LIG1-213ENST00000596672 PATL2C9JE40 543 aaKnown RBP12.56□□□□□ -0.4
LIG1-213ENST00000596672 GLRX3O76003 335 aaKnown RBP12.56□□□□□ -0.4
LIG1-213ENST00000596672 ERCC3P19447 782 aa12.56□□□□□ -0.4
LIG1-213ENST00000596672 CYP2C19P33261 490 aa12.56□□□□□ -0.4
LIG1-213ENST00000596672 FXR1P51114 621 aaKnown RBP eCLIP12.56□□□□□ -0.4
LIG1-213ENST00000596672 FAM83BQ5T0W9 1011 aa12.56□□□□□ -0.4
LIG1-213ENST00000596672 RASGRP2Q7LDG7 609 aa12.56□□□□□ -0.4
LIG1-213ENST00000596672 GTF3C2Q8WUA4 911 aaPredicted RBP12.56□□□□□ -0.4
LIG1-213ENST00000596672 SOCS4Q8WXH5 440 aa12.56□□□□□ -0.4
LIG1-213ENST00000596672 APBA2Q99767 749 aa12.56□□□□□ -0.4
LIG1-213ENST00000596672 HMX1Q9NP08 348 aaPredicted RBP12.56□□□□□ -0.4
LIG1-213ENST00000596672 ARPP21Q9UBL0 812 aaPredicted RBP12.56□□□□□ -0.4
LIG1-213ENST00000596672 LAMA2P24043 3122 aaKnown RBP12.56□□□□□ -0.4
LIG1-213ENST00000596672 FLOT1O75955 427 aa12.55□□□□□ -0.4
LIG1-213ENST00000596672 NDUFB10O96000 172 aa12.55□□□□□ -0.4
LIG1-213ENST00000596672 ZFYP08048 801 aaPredicted RBP12.55□□□□□ -0.4
LIG1-213ENST00000596672 COL6A1P12109 1028 aa12.55□□□□□ -0.4
LIG1-213ENST00000596672 ZKSCAN1P17029 563 aaPredicted RBP12.55□□□□□ -0.4
LIG1-213ENST00000596672 RGS2P41220 211 aa12.55□□□□□ -0.4
LIG1-213ENST00000596672 ATP2B2Q01814 1243 aa12.55□□□□□ -0.4
LIG1-213ENST00000596672 SMC5Q8IY18 1101 aa12.55□□□□□ -0.4
LIG1-213ENST00000596672 DPF3Q92784 378 aa12.55□□□□□ -0.4
LIG1-213ENST00000596672 FAM227BQ96M60 508 aa12.55□□□□□ -0.4
LIG1-213ENST00000596672 FSD1Q9BTV5 496 aa12.55□□□□□ -0.4
LIG1-213ENST00000596672 LNPKQ9C0E8 428 aa12.55□□□□□ -0.4
LIG1-213ENST00000596672 KANSL2Q9H9L4 492 aa12.55□□□□□ -0.4
LIG1-213ENST00000596672 HOXC10Q9NYD6 342 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms