RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 ZMYM6O95789 1325 aa13.13□□□□□ -0.31
LIG1-211ENST00000596457 USP17L15C9J2P7 530 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 USP17L13C9JLJ4 530 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 USP17L11C9JVI0 530 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 USP17L18D6R9N7 530 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 USP17L22D6RA61 530 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 USP17L17D6RBQ6 530 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 USP17L19D6RCP7 530 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 USP17L20D6RJB6 530 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 CDC45O75419 566 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 VCAM1P19320 739 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 USP17L24Q0WX57 530 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 KIF22Q14807 665 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 KIAA1755Q5JYT7 1200 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 C17orf99Q6UX52 265 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 TBC1D10CQ8IV04 446 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 ANKRD13CQ8N6S4 541 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 NEDD1Q8NHV4 660 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 CEP95Q96GE4 821 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 ESYT1Q9BSJ8 1104 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 TANGO6Q9C0B7 1094 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 NBPF3Q9H094 633 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 ISY1Q9ULR0 285 aaKnown RBP13.12□□□□□ -0.31
LIG1-211ENST00000596457 HPS5Q9UPZ3 1129 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 TMX2Q9Y320 296 aa13.12□□□□□ -0.31
LIG1-211ENST00000596457 NMT2O60551 498 aa13.11□□□□□ -0.31
LIG1-211ENST00000596457 PEX10O60683 326 aa13.11□□□□□ -0.31
LIG1-211ENST00000596457 STAG1Q8WVM7 1258 aa13.11□□□□□ -0.31
LIG1-211ENST00000596457 C12orf42Q96LP6 360 aa13.11□□□□□ -0.31
LIG1-211ENST00000596457 PAGR1Q9BTK6 254 aa13.11□□□□□ -0.31
LIG1-211ENST00000596457 ARHGAP39Q9C0H5 1083 aa13.11□□□□□ -0.31
LIG1-211ENST00000596457 RNF41Q9H4P4 317 aaPredicted RBP13.11□□□□□ -0.31
LIG1-211ENST00000596457 VCPKMTQ9H867 229 aa13.11□□□□□ -0.31
LIG1-211ENST00000596457 GOPCQ9HD26 462 aa13.11□□□□□ -0.31
LIG1-211ENST00000596457 NYAP2Q9P242 653 aa13.11□□□□□ -0.31
LIG1-211ENST00000596457 MTMR7Q9Y216 660 aa13.11□□□□□ -0.31
LIG1-211ENST00000596457 TRIM17Q9Y577 477 aa13.11□□□□□ -0.31
LIG1-211ENST00000596457 NEDD4P46934 1319 aa13.11□□□□□ -0.31
LIG1-211ENST00000596457 MGAMO43451 1857 aa13.1□□□□□ -0.31
LIG1-211ENST00000596457 IGKV6D-41A0A0C4DH26 115 aa13.1□□□□□ -0.31
LIG1-211ENST00000596457 ORC4O43929 436 aa13.1□□□□□ -0.31
LIG1-211ENST00000596457 FMNL1O95466 1100 aaPredicted RBP13.1□□□□□ -0.31
LIG1-211ENST00000596457 TTLL1O95922 423 aa13.1□□□□□ -0.31
LIG1-211ENST00000596457 HOXA7P31268 230 aaPredicted RBP13.1□□□□□ -0.31
LIG1-211ENST00000596457 CATSPERGQ6ZRH7 1159 aa13.1□□□□□ -0.31
LIG1-211ENST00000596457 LRRC47Q8N1G4 583 aaKnown RBP13.1□□□□□ -0.31
LIG1-211ENST00000596457 ZKSCAN3Q9BRR0 538 aa13.1□□□□□ -0.31
LIG1-211ENST00000596457 EFCC1Q9HA90 598 aa13.1□□□□□ -0.31
LIG1-211ENST00000596457 ANO2Q9NQ90 1003 aa13.1□□□□□ -0.31
LIG1-211ENST00000596457 MTMR4Q9NYA4 1195 aa13.1□□□□□ -0.31
LIG1-211ENST00000596457 STX8Q9UNK0 236 aa13.1□□□□□ -0.31
LIG1-211ENST00000596457 U3KPZ7 1027 aaPredicted RBP13.1□□□□□ -0.31
LIG1-211ENST00000596457 ADGRA2Q96PE1 1338 aa13.1□□□□□ -0.31
LIG1-211ENST00000596457 CUL9Q8IWT3 2517 aa13.09□□□□□ -0.31
LIG1-211ENST00000596457 B4E1Z4 1266 aa13.09□□□□□ -0.31
LIG1-211ENST00000596457 GNRH1P01148 92 aa13.09□□□□□ -0.31
LIG1-211ENST00000596457 BCRP11274 1271 aa13.09□□□□□ -0.31
LIG1-211ENST00000596457 PSMC4P43686 418 aa13.09□□□□□ -0.31
LIG1-211ENST00000596457 HERVK_113P62684 666 aa13.09□□□□□ -0.31
LIG1-211ENST00000596457 FAM83BQ5T0W9 1011 aa13.09□□□□□ -0.31
LIG1-211ENST00000596457 OTOP1Q7RTM1 612 aa13.09□□□□□ -0.31
LIG1-211ENST00000596457 SLC17A8Q8NDX2 589 aa13.09□□□□□ -0.31
LIG1-211ENST00000596457 ESR2Q92731 530 aa13.09□□□□□ -0.31
LIG1-211ENST00000596457 NUP88Q99567 741 aaPredicted RBP13.09□□□□□ -0.31
LIG1-211ENST00000596457 IL17RBQ9NRM6 502 aa13.09□□□□□ -0.31
LIG1-211ENST00000596457 RBM8AQ9Y5S9 174 aaKnown RBP13.09□□□□□ -0.31
LIG1-211ENST00000596457 F5H6K3 240 aa13.08□□□□□ -0.32
LIG1-211ENST00000596457 KDM4AO75164 1064 aa13.08□□□□□ -0.32
LIG1-211ENST00000596457 FLOT1O75955 427 aa13.08□□□□□ -0.32
LIG1-211ENST00000596457 FGRP09769 529 aa13.08□□□□□ -0.32
LIG1-211ENST00000596457 GCLCP48506 637 aaPredicted RBP13.08□□□□□ -0.32
LIG1-211ENST00000596457 PRMT2P55345 433 aa13.08□□□□□ -0.32
LIG1-211ENST00000596457 LACTBP83111 547 aaPredicted RBP13.08□□□□□ -0.32
LIG1-211ENST00000596457 CAP1Q01518 475 aa13.08□□□□□ -0.32
LIG1-211ENST00000596457 KLRC3Q07444 240 aa13.08□□□□□ -0.32
LIG1-211ENST00000596457 NKX2-3Q8TAU0 364 aa13.08□□□□□ -0.32
LIG1-211ENST00000596457 LPAR1Q92633 364 aa13.08□□□□□ -0.32
LIG1-211ENST00000596457 MAP4K1Q92918 833 aa13.08□□□□□ -0.32
LIG1-211ENST00000596457 LSG1Q9H089 658 aaKnown RBP13.08□□□□□ -0.32
LIG1-211ENST00000596457 PTPN22Q9Y2R2 807 aa13.08□□□□□ -0.32
LIG1-211ENST00000596457 A0A0C4DFX4 3053 aa13.08□□□□□ -0.32
LIG1-211ENST00000596457 PLIN4Q96Q06 1357 aa13.07□□□□□ -0.32
LIG1-211ENST00000596457 WDR46O15213 610 aaKnown RBP13.07□□□□□ -0.32
LIG1-211ENST00000596457 NDUFB10O96000 172 aa13.07□□□□□ -0.32
LIG1-211ENST00000596457 CYP21A2P08686 494 aa13.07□□□□□ -0.32
LIG1-211ENST00000596457 PCP11498 1178 aaKnown RBP13.07□□□□□ -0.32
LIG1-211ENST00000596457 TRDNQ13061 729 aa13.07□□□□□ -0.32
LIG1-211ENST00000596457 COG2Q14746 738 aa13.07□□□□□ -0.32
LIG1-211ENST00000596457 PPP4R3BQ5MIZ7 849 aa13.07□□□□□ -0.32
LIG1-211ENST00000596457 SLFN13Q68D06 897 aa13.07□□□□□ -0.32
LIG1-211ENST00000596457 CCAR1Q8IX12 1150 aaKnown RBP13.07□□□□□ -0.32
LIG1-211ENST00000596457 MKL1Q969V6 931 aa13.07□□□□□ -0.32
LIG1-211ENST00000596457 KRT23Q9C075 422 aa13.07□□□□□ -0.32
LIG1-211ENST00000596457 CWC22Q9HCG8 908 aaKnown RBP13.07□□□□□ -0.32
LIG1-211ENST00000596457 CTGFP29279 349 aa13.06□□□□□ -0.32
LIG1-211ENST00000596457 FCGRTP55899 365 aa13.06□□□□□ -0.32
LIG1-211ENST00000596457 IKQ13123 557 aaPredicted RBP13.06□□□□□ -0.32
LIG1-211ENST00000596457 PLS1Q14651 629 aa13.06□□□□□ -0.32
LIG1-211ENST00000596457 Q3C1V9 767 aa13.06□□□□□ -0.32
LIG1-211ENST00000596457 WDR78Q5VTH9 848 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms