RNA–Protein interactions for RNA: ENST00000596121.5

VRK3-210, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 983 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-210ENST00000596121 USP17L24Q0WX57 530 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 DSCC1Q9BVC3 393 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 ARHGEF10LQ9HCE6 1279 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 MTMR4Q9NYA4 1195 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 NYAP2Q9P242 653 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 CLIP2Q9UDT6 1046 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 PNMA3Q9UL41 463 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 HPS5Q9UPZ3 1129 aa13.25□□□□□ -0.29
VRK3-210ENST00000596121 PLIN4Q96Q06 1357 aa13.24□□□□□ -0.29
VRK3-210ENST00000596121 SGSM2O43147 1006 aa13.24□□□□□ -0.29
VRK3-210ENST00000596121 CAPN15O75808 1086 aa13.24□□□□□ -0.29
VRK3-210ENST00000596121 SLC3A2P08195 630 aaKnown RBP13.24□□□□□ -0.29
VRK3-210ENST00000596121 GCLCP48506 637 aaPredicted RBP13.24□□□□□ -0.29
VRK3-210ENST00000596121 MFAP1P55081 439 aaKnown RBP13.24□□□□□ -0.29
VRK3-210ENST00000596121 PKN2Q16513 984 aaKnown RBP13.24□□□□□ -0.29
VRK3-210ENST00000596121 FAM110CQ1W6H9 321 aa13.24□□□□□ -0.29
VRK3-210ENST00000596121 FBXO46Q6PJ61 603 aaPredicted RBP13.24□□□□□ -0.29
VRK3-210ENST00000596121 MKL1Q969V6 931 aa13.24□□□□□ -0.29
VRK3-210ENST00000596121 MORF4L1Q9UBU8 362 aa13.24□□□□□ -0.29
VRK3-210ENST00000596121 RLFQ13129 1914 aa13.23□□□□□ -0.29
VRK3-210ENST00000596121 NEDD4P46934 1319 aa13.23□□□□□ -0.29
VRK3-210ENST00000596121 SPDYE16A6NNV3 312 aaPredicted RBP13.23□□□□□ -0.29
VRK3-210ENST00000596121 RANBP6O60518 1105 aaKnown RBP13.23□□□□□ -0.29
VRK3-210ENST00000596121 TSPY3P0CV98 308 aa13.23□□□□□ -0.29
VRK3-210ENST00000596121 TSPY8P0CW00 308 aa13.23□□□□□ -0.29
VRK3-210ENST00000596121 NOVP48745 357 aa13.23□□□□□ -0.29
VRK3-210ENST00000596121 BMP2KLQ5H9B9 411 aa13.23□□□□□ -0.29
VRK3-210ENST00000596121 AKNAD1Q5T1N1 836 aa13.23□□□□□ -0.29
VRK3-210ENST00000596121 NUP88Q99567 741 aaPredicted RBP13.23□□□□□ -0.29
VRK3-210ENST00000596121 ZNF287Q9HBT7 754 aa13.23□□□□□ -0.29
VRK3-210ENST00000596121 FBXO28Q9NVF7 368 aa13.23□□□□□ -0.29
VRK3-210ENST00000596121 PPP4R2Q9NY27 417 aa13.23□□□□□ -0.29
VRK3-210ENST00000596121 BTBD7Q9P203 1132 aa13.23□□□□□ -0.29
VRK3-210ENST00000596121 GABRQQ9UN88 632 aa13.23□□□□□ -0.29
VRK3-210ENST00000596121 PTCH2Q9Y6C5 1203 aa13.23□□□□□ -0.29
VRK3-210ENST00000596121 TAF6LQ9Y6J9 622 aa13.23□□□□□ -0.29
VRK3-210ENST00000596121 RAD50Q92878 1312 aa13.22□□□□□ -0.29
VRK3-210ENST00000596121 CENPFP49454 3210 aa13.22□□□□□ -0.29
VRK3-210ENST00000596121 F5H6K3 240 aa13.22□□□□□ -0.29
VRK3-210ENST00000596121 FMNL1O95466 1100 aaPredicted RBP13.22□□□□□ -0.29
VRK3-210ENST00000596121 NDUFB10O96000 172 aa13.22□□□□□ -0.29
VRK3-210ENST00000596121 KLRC3Q07444 240 aa13.22□□□□□ -0.29
VRK3-210ENST00000596121 KIF22Q14807 665 aa13.22□□□□□ -0.29
VRK3-210ENST00000596121 RRP12Q5JTH9 1297 aaKnown RBP13.22□□□□□ -0.29
VRK3-210ENST00000596121 FAM83BQ5T0W9 1011 aa13.22□□□□□ -0.29
VRK3-210ENST00000596121 LBX2Q6XYB7 198 aa13.22□□□□□ -0.29
VRK3-210ENST00000596121 LRRC47Q8N1G4 583 aaKnown RBP13.22□□□□□ -0.29
VRK3-210ENST00000596121 STAG1Q8WVM7 1258 aa13.22□□□□□ -0.29
VRK3-210ENST00000596121 LPAR1Q92633 364 aa13.22□□□□□ -0.29
VRK3-210ENST00000596121 PAGR1Q9BTK6 254 aa13.22□□□□□ -0.29
VRK3-210ENST00000596121 PORCNQ9H237 461 aa13.22□□□□□ -0.29
VRK3-210ENST00000596121 SRRDQ9UH36 339 aa13.22□□□□□ -0.29
VRK3-210ENST00000596121 DOCK3Q8IZD9 2030 aa13.22□□□□□ -0.29
VRK3-210ENST00000596121 CCDC85CA6NKD9 419 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 ZNF213O14771 459 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 TTLL1O95922 423 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 DSG3P32926 999 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 FCGRTP55899 365 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 ERVK-9P63128 1117 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 ERVK-24P63145 666 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 PRKCZQ05513 592 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 COG2Q14746 738 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 ERICH6BQ5W0A0 696 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 RASGRP2Q7LDG7 609 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 GPRC5AQ8NFJ5 357 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 CHMP4CQ96CF2 233 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 ESYT1Q9BSJ8 1104 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 TANGO6Q9C0B7 1094 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 SH2D4AQ9H788 454 aa13.21□□□□□ -0.29
VRK3-210ENST00000596121 TSPY2A6NKD2 308 aa13.2□□□□□ -0.3
VRK3-210ENST00000596121 WDR46O15213 610 aaKnown RBP13.2□□□□□ -0.3
VRK3-210ENST00000596121 RAD21O60216 631 aa13.2□□□□□ -0.3
VRK3-210ENST00000596121 RCSD1Q6JBY9 416 aa13.2□□□□□ -0.3
VRK3-210ENST00000596121 MFSD6Q6ZSS7 791 aa13.2□□□□□ -0.3
VRK3-210ENST00000596121 RUFY2Q8WXA3 655 aa13.2□□□□□ -0.3
VRK3-210ENST00000596121 ATG4CQ96DT6 458 aa13.2□□□□□ -0.3
VRK3-210ENST00000596121 LSG1Q9H089 658 aaKnown RBP13.2□□□□□ -0.3
VRK3-210ENST00000596121 GOPCQ9HD26 462 aa13.2□□□□□ -0.3
VRK3-210ENST00000596121 TOMM22Q9NS69 142 aa13.2□□□□□ -0.3
VRK3-210ENST00000596121 TCP11L1Q9NUJ3 509 aa13.2□□□□□ -0.3
VRK3-210ENST00000596121 GJD2Q9UKL4 321 aa13.2□□□□□ -0.3
VRK3-210ENST00000596121 ADAMTS5Q9UNA0 930 aa13.2□□□□□ -0.3
VRK3-210ENST00000596121 RABGAP1Q9Y3P9 1069 aa13.2□□□□□ -0.3
VRK3-210ENST00000596121 MYPNQ86TC9 1320 aa13.19□□□□□ -0.3
VRK3-210ENST00000596121 MGAMO43451 1857 aa13.19□□□□□ -0.3
VRK3-210ENST00000596121 TNPO2O14787 897 aaKnown RBP13.19□□□□□ -0.3
VRK3-210ENST00000596121 FLOT1O75955 427 aa13.19□□□□□ -0.3
VRK3-210ENST00000596121 GNRH1P01148 92 aa13.19□□□□□ -0.3
VRK3-210ENST00000596121 CYP21A2P08686 494 aa13.19□□□□□ -0.3
VRK3-210ENST00000596121 ARHGEF6Q15052 776 aa13.19□□□□□ -0.3
VRK3-210ENST00000596121 GMCL1P1Q8NEA9 526 aa13.19□□□□□ -0.3
VRK3-210ENST00000596121 SH3TC2Q8TF17 1288 aa13.19□□□□□ -0.3
VRK3-210ENST00000596121 MAP4K1Q92918 833 aa13.19□□□□□ -0.3
VRK3-210ENST00000596121 HOXC10Q9NYD6 342 aa13.19□□□□□ -0.3
VRK3-210ENST00000596121 B4E1Z4 1266 aa13.18□□□□□ -0.3
VRK3-210ENST00000596121 KDM4AO75164 1064 aa13.18□□□□□ -0.3
VRK3-210ENST00000596121 FLT3LGP49771 235 aa13.18□□□□□ -0.3
VRK3-210ENST00000596121 COL9A3Q14050 684 aaPredicted RBP13.18□□□□□ -0.3
VRK3-210ENST00000596121 IMMTQ16891 758 aaKnown RBP13.18□□□□□ -0.3
VRK3-210ENST00000596121 SLFN13Q68D06 897 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms