RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 PFASO15067 1338 aa15.07■□□□□ 0
UPF1-203ENST00000594504 MBD4O95243 580 aa15.06■□□□□ 0
UPF1-203ENST00000594504 AKR1B1P15121 316 aa15.06■□□□□ 0
UPF1-203ENST00000594504 CCNA1P78396 465 aa15.06■□□□□ 0
UPF1-203ENST00000594504 HDAC1Q13547 482 aaPredicted RBP15.06■□□□□ 0
UPF1-203ENST00000594504 SIAH1Q8IUQ4 282 aa15.06■□□□□ 0
UPF1-203ENST00000594504 TRMT44Q8IYL2 757 aaKnown RBP15.06■□□□□ 0
UPF1-203ENST00000594504 LRCH3Q96II8 777 aa15.06■□□□□ 0
UPF1-203ENST00000594504 BAZ2AQ9UIF9 1905 aaKnown RBP15.05■□□□□ 0
UPF1-203ENST00000594504 SLC15A5A6NIM6 579 aa15.05■□□□□ -0
UPF1-203ENST00000594504 ATP5JP18859 108 aa15.05■□□□□ -0
UPF1-203ENST00000594504 COG2Q14746 738 aa15.05■□□□□ -0
UPF1-203ENST00000594504 LBX2Q6XYB7 198 aa15.05■□□□□ -0
UPF1-203ENST00000594504 GDF15Q99988 308 aa15.05■□□□□ -0
UPF1-203ENST00000594504 GLRX3O76003 335 aaKnown RBP15.04■□□□□ -0
UPF1-203ENST00000594504 CNGA1P29973 690 aa15.04■□□□□ -0
UPF1-203ENST00000594504 ATP2B2Q01814 1243 aa15.04■□□□□ -0
UPF1-203ENST00000594504 SAMD1Q6SPF0 538 aaPredicted RBP15.04■□□□□ -0
UPF1-203ENST00000594504 SPICE1Q8N0Z3 855 aa15.04■□□□□ -0
UPF1-203ENST00000594504 HAUS7Q99871 368 aa15.04■□□□□ -0
UPF1-203ENST00000594504 MOV10L1Q9BXT6 1211 aaKnown RBP15.04■□□□□ -0
UPF1-203ENST00000594504 TANGO6Q9C0B7 1094 aa15.04■□□□□ -0
UPF1-203ENST00000594504 USP17L12C9JPN9 530 aa15.03■□□□□ -0
UPF1-203ENST00000594504 USP17L21D6R901 530 aa15.03■□□□□ -0
UPF1-203ENST00000594504 COL6A1P12109 1028 aa15.03■□□□□ -0
UPF1-203ENST00000594504 CYP2C19P33261 490 aa15.03■□□□□ -0
UPF1-203ENST00000594504 CDK8P49336 464 aa15.03■□□□□ -0
UPF1-203ENST00000594504 IRX6P78412 446 aaPredicted RBP15.03■□□□□ -0
UPF1-203ENST00000594504 GRB14Q14449 540 aa15.03■□□□□ -0
UPF1-203ENST00000594504 LRRC26Q2I0M4 334 aa15.03■□□□□ -0
UPF1-203ENST00000594504 C12orf60Q5U649 245 aa15.03■□□□□ -0
UPF1-203ENST00000594504 MFSD14CQ5VZR4 134 aa15.03■□□□□ -0
UPF1-203ENST00000594504 TMEM179Q6ZVK1 233 aa15.03■□□□□ -0
UPF1-203ENST00000594504 TRPV1Q8NER1 839 aa15.03■□□□□ -0
UPF1-203ENST00000594504 PUS7LQ9H0K6 701 aaKnown RBP15.03■□□□□ -0
UPF1-203ENST00000594504 RWDD1Q9H446 243 aaPredicted RBP15.03■□□□□ -0
UPF1-203ENST00000594504 HOXC10Q9NYD6 342 aa15.03■□□□□ -0
UPF1-203ENST00000594504 SWAP70Q9UH65 585 aa15.03■□□□□ -0
UPF1-203ENST00000594504 IVNS1ABPQ9Y6Y0 642 aa15.03■□□□□ -0
UPF1-203ENST00000594504 MYH8P13535 1937 aa15.03■□□□□ -0
UPF1-203ENST00000594504 RLFQ13129 1914 aa15.03■□□□□ -0
UPF1-203ENST00000594504 ERCC3P19447 782 aa15.02■□□□□ -0
UPF1-203ENST00000594504 DSG3P32926 999 aa15.02■□□□□ -0
UPF1-203ENST00000594504 MAGEA10P43363 369 aaPredicted RBP15.02■□□□□ -0
UPF1-203ENST00000594504 PLS1Q14651 629 aa15.02■□□□□ -0
UPF1-203ENST00000594504 STK11IPQ8N1F8 1099 aa15.02■□□□□ -0
UPF1-203ENST00000594504 ATP8A2Q9NTI2 1148 aa15.02■□□□□ -0
UPF1-203ENST00000594504 SLC4A4Q9Y6R1 1079 aa15.02■□□□□ -0
UPF1-203ENST00000594504 FRMPD3Q5JV73 1810 aa15.01□□□□□ -0.01
UPF1-203ENST00000594504 A0A1W2PPC1 479 aa15.01□□□□□ -0.01
UPF1-203ENST00000594504 COBLO75128 1261 aa15.01□□□□□ -0.01
UPF1-203ENST00000594504 HOXC6P09630 235 aa15.01□□□□□ -0.01
UPF1-203ENST00000594504 BMP8BP34820 402 aa15.01□□□□□ -0.01
UPF1-203ENST00000594504 UBE3CQ15386 1083 aa15.01□□□□□ -0.01
UPF1-203ENST00000594504 ANO1Q5XXA6 986 aa15.01□□□□□ -0.01
UPF1-203ENST00000594504 CTR9Q6PD62 1173 aa15.01□□□□□ -0.01
UPF1-203ENST00000594504 DPP9Q86TI2 863 aa15.01□□□□□ -0.01
UPF1-203ENST00000594504 ATG4CQ96DT6 458 aa15.01□□□□□ -0.01
UPF1-203ENST00000594504 SENP6Q9GZR1 1112 aaPredicted RBP15.01□□□□□ -0.01
UPF1-203ENST00000594504 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.01□□□□□ -0.013e-6■■■■■ 34.1
UPF1-203ENST00000594504 SPATC1LQ9H0A9 340 aa15.01□□□□□ -0.01
UPF1-203ENST00000594504 DDX20Q9UHI6 824 aaKnown RBP15.01□□□□□ -0.01
UPF1-203ENST00000594504 TMX2Q9Y320 296 aa15.01□□□□□ -0.01
UPF1-203ENST00000594504 MYH7P12883 1935 aa15□□□□□ -0.01
UPF1-203ENST00000594504 FLOT1O75955 427 aa15□□□□□ -0.01
UPF1-203ENST00000594504 EEF2P13639 858 aaKnown RBP15□□□□□ -0.01
UPF1-203ENST00000594504 ADORA2AP29274 412 aa15□□□□□ -0.01
UPF1-203ENST00000594504 ICA1Q05084 483 aa15□□□□□ -0.01
UPF1-203ENST00000594504 PRAMEF19Q5SWL8 479 aa15□□□□□ -0.01
UPF1-203ENST00000594504 NCAPG2Q86XI2 1143 aa15□□□□□ -0.01
UPF1-203ENST00000594504 VCPKMTQ9H867 229 aa15□□□□□ -0.01
UPF1-203ENST00000594504 ARHGEF10LQ9HCE6 1279 aa15□□□□□ -0.01
UPF1-203ENST00000594504 ZBTB47Q9UFB7 747 aaPredicted RBP15□□□□□ -0.01
UPF1-203ENST00000594504 IGHA2P01877 340 aa14.99□□□□□ -0.01
UPF1-203ENST00000594504 ATN1P54259 1190 aaPredicted RBP14.99□□□□□ -0.01
UPF1-203ENST00000594504 MDM2Q00987 491 aaPredicted RBP14.99□□□□□ -0.01
UPF1-203ENST00000594504 GJC2Q5T442 439 aaPredicted RBP14.99□□□□□ -0.01
UPF1-203ENST00000594504 TSHZ3Q63HK5 1081 aa14.99□□□□□ -0.01
UPF1-203ENST00000594504 C16orf86Q6ZW13 317 aa14.99□□□□□ -0.01
UPF1-203ENST00000594504 GPATCH3Q96I76 525 aa14.99□□□□□ -0.01
UPF1-203ENST00000594504 CCDC17Q96LX7 622 aa14.99□□□□□ -0.01
UPF1-203ENST00000594504 FBXO28Q9NVF7 368 aa14.99□□□□□ -0.01
UPF1-203ENST00000594504 ZNFX1Q9P2E3 1918 aaKnown RBP14.99□□□□□ -0.01
UPF1-203ENST00000594504 TRIOBPQ9H2D6 2365 aa14.99□□□□□ -0.01
UPF1-203ENST00000594504 STRNO43815 780 aa14.98□□□□□ -0.01
UPF1-203ENST00000594504 RAD21O60216 631 aa14.98□□□□□ -0.01
UPF1-203ENST00000594504 CYBAP13498 195 aa14.98□□□□□ -0.01
UPF1-203ENST00000594504 TMEM132BQ14DG7 1078 aa14.98□□□□□ -0.01
UPF1-203ENST00000594504 ANKRD45Q5TZF3 282 aa14.98□□□□□ -0.01
UPF1-203ENST00000594504 SMC5Q8IY18 1101 aa14.98□□□□□ -0.01
UPF1-203ENST00000594504 LPAR1Q92633 364 aa14.98□□□□□ -0.01
UPF1-203ENST00000594504 UBE2OQ9C0C9 1292 aaKnown RBP14.98□□□□□ -0.01
UPF1-203ENST00000594504 ECHDC1Q9NTX5 307 aa14.98□□□□□ -0.01
UPF1-203ENST00000594504 COL11A1P12107 1806 aaPredicted RBP14.98□□□□□ -0.01
UPF1-203ENST00000594504 PARP14Q460N5 1801 aa14.97□□□□□ -0.01
UPF1-203ENST00000594504 IGHDP01880 384 aa14.97□□□□□ -0.01
UPF1-203ENST00000594504 ZSCAN25Q6NSZ9 544 aa14.97□□□□□ -0.01
UPF1-203ENST00000594504 AMOTL1Q8IY63 956 aa14.97□□□□□ -0.01
UPF1-203ENST00000594504 SHCBP1Q8NEM2 672 aa14.97□□□□□ -0.01
UPF1-203ENST00000594504 STRBPQ96SI9 672 aaKnown RBP14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms