RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 FAM110CQ1W6H9 321 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 AKNAD1Q5T1N1 836 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 GTF3C2Q8WUA4 911 aaPredicted RBP14.1□□□□□ -0.15
LIG3-213ENST00000590630 STAG1Q8WVM7 1258 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 MCOLN1Q9GZU1 580 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 RNF41Q9H4P4 317 aaPredicted RBP14.1□□□□□ -0.15
LIG3-213ENST00000590630 VCPKMTQ9H867 229 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 GOPCQ9HD26 462 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 MTMR4Q9NYA4 1195 aa14.1□□□□□ -0.15
LIG3-213ENST00000590630 RANBP6O60518 1105 aaKnown RBP14.09□□□□□ -0.15
LIG3-213ENST00000590630 TTLL1O95922 423 aa14.09□□□□□ -0.15
LIG3-213ENST00000590630 HERVK_113P62684 666 aa14.09□□□□□ -0.15
LIG3-213ENST00000590630 IMMTQ16891 758 aaKnown RBP14.09□□□□□ -0.15
LIG3-213ENST00000590630 FAM47AQ5JRC9 791 aa14.09□□□□□ -0.15
LIG3-213ENST00000590630 CATSPERGQ6ZRH7 1159 aa14.09□□□□□ -0.15
LIG3-213ENST00000590630 MFSD6Q6ZSS7 791 aa14.09□□□□□ -0.15
LIG3-213ENST00000590630 OTOP1Q7RTM1 612 aa14.09□□□□□ -0.15
LIG3-213ENST00000590630 ANKRD13CQ8N6S4 541 aa14.09□□□□□ -0.15
LIG3-213ENST00000590630 CEP95Q96GE4 821 aa14.09□□□□□ -0.15
LIG3-213ENST00000590630 NBPF3Q9H094 633 aa14.09□□□□□ -0.15
LIG3-213ENST00000590630 RPAP3Q9H6T3 665 aaPredicted RBP14.09□□□□□ -0.15
LIG3-213ENST00000590630 EFCC1Q9HA90 598 aa14.09□□□□□ -0.15
LIG3-213ENST00000590630 TOMM22Q9NS69 142 aa14.09□□□□□ -0.15
LIG3-213ENST00000590630 TRIM17Q9Y577 477 aa14.09□□□□□ -0.15
LIG3-213ENST00000590630 DOCK3Q8IZD9 2030 aa14.08□□□□□ -0.15
LIG3-213ENST00000590630 WDR46O15213 610 aaKnown RBP14.08□□□□□ -0.16
LIG3-213ENST00000590630 CASC1Q6TDU7 716 aa14.08□□□□□ -0.16
LIG3-213ENST00000590630 TBC1D10CQ8IV04 446 aa14.08□□□□□ -0.16
LIG3-213ENST00000590630 SPICE1Q8N0Z3 855 aa14.08□□□□□ -0.16
LIG3-213ENST00000590630 MKL1Q969V6 931 aa14.08□□□□□ -0.16
LIG3-213ENST00000590630 P2RX7Q99572 595 aaKnown RBP14.08□□□□□ -0.16
LIG3-213ENST00000590630 TANGO6Q9C0B7 1094 aa14.08□□□□□ -0.16
LIG3-213ENST00000590630 INCENPQ9NQS7 918 aa14.08□□□□□ -0.16
LIG3-213ENST00000590630 TACC3Q9Y6A5 838 aa14.08□□□□□ -0.16
LIG3-213ENST00000590630 A0A0G2JMZ2 1700 aa14.07□□□□□ -0.16
LIG3-213ENST00000590630 PSMC4P43686 418 aa14.07□□□□□ -0.16
LIG3-213ENST00000590630 CAP1Q01518 475 aa14.07□□□□□ -0.16
LIG3-213ENST00000590630 RRP12Q5JTH9 1297 aaKnown RBP14.07□□□□□ -0.16
LIG3-213ENST00000590630 KIAA1755Q5JYT7 1200 aa14.07□□□□□ -0.16
LIG3-213ENST00000590630 FBXO46Q6PJ61 603 aaPredicted RBP14.07□□□□□ -0.16
LIG3-213ENST00000590630 LBX2Q6XYB7 198 aa14.07□□□□□ -0.16
LIG3-213ENST00000590630 ESYT1Q9BSJ8 1104 aa14.07□□□□□ -0.16
LIG3-213ENST00000590630 ARHGAP39Q9C0H5 1083 aa14.07□□□□□ -0.16
LIG3-213ENST00000590630 MORF4L1Q9UBU8 362 aa14.07□□□□□ -0.16
LIG3-213ENST00000590630 CLIP2Q9UDT6 1046 aa14.07□□□□□ -0.16
LIG3-213ENST00000590630 U3KPZ7 1027 aaPredicted RBP14.07□□□□□ -0.16
LIG3-213ENST00000590630 CDC45O75419 566 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 FCGRTP55899 365 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 PTH1RQ03431 593 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 COG2Q14746 738 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 KIAA1211Q6ZU35 1233 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 GMCL1P1Q8NEA9 526 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 GPRC5AQ8NFJ5 357 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 ESR2Q92731 530 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 TRIM47Q96LD4 638 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 CNNM2Q9H8M5 875 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 IL17RBQ9NRM6 502 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 TCP11L1Q9NUJ3 509 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 HOXC10Q9NYD6 342 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 STX8Q9UNK0 236 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 NEDD4P46934 1319 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 MYPNQ86TC9 1320 aa14.06□□□□□ -0.16
LIG3-213ENST00000590630 COL11A1P12107 1806 aaPredicted RBP14.06□□□□□ -0.16
LIG3-213ENST00000590630 SPDYE16A6NNV3 312 aaPredicted RBP14.05□□□□□ -0.16
LIG3-213ENST00000590630 F5H6K3 240 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 RAD21O60216 631 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 NMT2O60551 498 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 FLOT1O75955 427 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 FMNL1O95466 1100 aaPredicted RBP14.05□□□□□ -0.16
LIG3-213ENST00000590630 NDUFB10O96000 172 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 HOXD10P28358 340 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 NOVP48745 357 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 PRMT2P55345 433 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 KLRC3Q07444 240 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 MAP4K1Q92918 833 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 ABHD8Q96I13 439 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 TXNRD2Q9NNW7 524 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 RBPJLQ9UBG7 517 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 PTPN22Q9Y2R2 807 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 RABGAP1Q9Y3P9 1069 aa14.05□□□□□ -0.16
LIG3-213ENST00000590630 BRCA2P51587 3418 aa14.04□□□□□ -0.16
LIG3-213ENST00000590630 CTGFP29279 349 aa14.04□□□□□ -0.16
LIG3-213ENST00000590630 ERVK-9P63128 1117 aa14.04□□□□□ -0.16
LIG3-213ENST00000590630 ERVK-24P63145 666 aa14.04□□□□□ -0.16
LIG3-213ENST00000590630 LRRC47Q8N1G4 583 aaKnown RBP14.04□□□□□ -0.16
LIG3-213ENST00000590630 MB21D1Q8N884 522 aa14.04□□□□□ -0.16
LIG3-213ENST00000590630 PAGR1Q9BTK6 254 aa14.04□□□□□ -0.16
LIG3-213ENST00000590630 KRT23Q9C075 422 aa14.04□□□□□ -0.16
LIG3-213ENST00000590630 SRRDQ9UH36 339 aa14.04□□□□□ -0.16
LIG3-213ENST00000590630 TNPO2O14787 897 aaKnown RBP14.03□□□□□ -0.16
LIG3-213ENST00000590630 CYP21A2P08686 494 aa14.03□□□□□ -0.16
LIG3-213ENST00000590630 DSG3P32926 999 aa14.03□□□□□ -0.16
LIG3-213ENST00000590630 CCNA1P78396 465 aa14.03□□□□□ -0.16
LIG3-213ENST00000590630 CCDC178Q5BJE1 867 aa14.03□□□□□ -0.16
LIG3-213ENST00000590630 FAM83BQ5T0W9 1011 aa14.03□□□□□ -0.16
LIG3-213ENST00000590630 POTEEQ6S8J3 1075 aa14.03□□□□□ -0.16
LIG3-213ENST00000590630 IQCA1Q86XH1 822 aa14.03□□□□□ -0.16
LIG3-213ENST00000590630 GMCL1Q96IK5 515 aa14.03□□□□□ -0.16
LIG3-213ENST00000590630 TTC14Q96N46 770 aa14.03□□□□□ -0.16
LIG3-213ENST00000590630 LSG1Q9H089 658 aaKnown RBP14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms