RNA–Protein interactions for RNA: ENST00000583804.2

TOP3A-216, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 1,465 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-216ENST00000583804 IRF6O14896 467 aa12.84□□□□□ -0.35
TOP3A-216ENST00000583804 TOP1P11387 765 aaKnown RBP12.84□□□□□ -0.35
TOP3A-216ENST00000583804 HOXD11P31277 338 aaPredicted RBP12.84□□□□□ -0.35
TOP3A-216ENST00000583804 GJA5P36382 358 aa12.84□□□□□ -0.35
TOP3A-216ENST00000583804 MTMR2Q13614 643 aa12.84□□□□□ -0.35
TOP3A-216ENST00000583804 SPRYD7Q5W111 196 aa12.84□□□□□ -0.35
TOP3A-216ENST00000583804 RCSD1Q6JBY9 416 aa12.84□□□□□ -0.35
TOP3A-216ENST00000583804 CYP4F22Q6NT55 531 aa12.84□□□□□ -0.35
TOP3A-216ENST00000583804 RASAL3Q86YV0 1011 aa12.84□□□□□ -0.35
TOP3A-216ENST00000583804 CCDC102AQ96A19 550 aa12.84□□□□□ -0.35
TOP3A-216ENST00000583804 IL17RAQ96F46 866 aa12.84□□□□□ -0.35
TOP3A-216ENST00000583804 HHIPL1Q96JK4 782 aa12.84□□□□□ -0.35
TOP3A-216ENST00000583804 TMEM47Q9BQJ4 181 aa12.84□□□□□ -0.35
TOP3A-216ENST00000583804 KAT14Q9H8E8 782 aa12.84□□□□□ -0.35
TOP3A-216ENST00000583804 WDR19Q8NEZ3 1342 aa12.83□□□□□ -0.35
TOP3A-216ENST00000583804 ATAD5Q96QE3 1844 aa12.83□□□□□ -0.36
TOP3A-216ENST00000583804 SH2B2O14492 632 aaPredicted RBP12.83□□□□□ -0.36
TOP3A-216ENST00000583804 CXCL11O14625 94 aa12.83□□□□□ -0.36
TOP3A-216ENST00000583804 LARGE1O95461 756 aa12.83□□□□□ -0.36
TOP3A-216ENST00000583804 HSPA6P17066 643 aa12.83□□□□□ -0.36
TOP3A-216ENST00000583804 BACE1P56817 501 aa12.83□□□□□ -0.36
TOP3A-216ENST00000583804 BECN1Q14457 450 aa12.83□□□□□ -0.36
TOP3A-216ENST00000583804 SEC23AQ15436 765 aa12.83□□□□□ -0.36
TOP3A-216ENST00000583804 ANKS1AQ92625 1134 aa12.83□□□□□ -0.36
TOP3A-216ENST00000583804 MKL1Q969V6 931 aa12.83□□□□□ -0.36
TOP3A-216ENST00000583804 MTA3Q9BTC8 594 aa12.83□□□□□ -0.36
TOP3A-216ENST00000583804 LY9Q9HBG7 655 aa12.83□□□□□ -0.36
TOP3A-216ENST00000583804 SENP2Q9HC62 589 aa12.83□□□□□ -0.36
TOP3A-216ENST00000583804 DAXXQ9UER7 740 aaPredicted RBP12.83□□□□□ -0.36
TOP3A-216ENST00000583804 TMX2Q9Y320 296 aa12.83□□□□□ -0.36
TOP3A-216ENST00000583804 CCDC69A6NI79 296 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 RASSF10A6NK89 507 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 C19orf81C9J6K1 198 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 F5H6K3 240 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 SLC10A3P09131 477 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 ZBTB48P10074 688 aaPredicted RBP12.82□□□□□ -0.36
TOP3A-216ENST00000583804 NOVP48745 357 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 HMGCS2P54868 508 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 KLRC3Q07444 240 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 APOBRQ0VD83 1088 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 STK3Q13188 491 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 SNAPC2Q13487 334 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 DGKZQ13574 1117 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 USP17L2Q6R6M4 530 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 GADL1Q6ZQY3 521 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 SPICE1Q8N0Z3 855 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 TMTC2Q8N394 836 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 BRF1Q92994 677 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 KIAA1683Q9H0B3 1180 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 GOPCQ9HD26 462 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 TMOD4Q9NZQ9 345 aa12.82□□□□□ -0.36
TOP3A-216ENST00000583804 K7ELQ4 463 aaPredicted RBP12.81□□□□□ -0.36
TOP3A-216ENST00000583804 LIFRP42702 1097 aa12.81□□□□□ -0.36
TOP3A-216ENST00000583804 GTF2A2P52657 109 aa12.81□□□□□ -0.36
TOP3A-216ENST00000583804 USP14P54578 494 aa12.81□□□□□ -0.36
TOP3A-216ENST00000583804 TOB2Q14106 344 aaPredicted RBP12.81□□□□□ -0.36
TOP3A-216ENST00000583804 SLFN13Q68D06 897 aa12.81□□□□□ -0.36
TOP3A-216ENST00000583804 SYNE3Q6ZMZ3 975 aa12.81□□□□□ -0.36
TOP3A-216ENST00000583804 CATIPQ7Z7H3 387 aa12.81□□□□□ -0.36
TOP3A-216ENST00000583804 PNMA1Q8ND90 353 aa12.81□□□□□ -0.36
TOP3A-216ENST00000583804 CAPNS2Q96L46 248 aa12.81□□□□□ -0.36
TOP3A-216ENST00000583804 VCPKMTQ9H867 229 aa12.81□□□□□ -0.36
TOP3A-216ENST00000583804 ISY1Q9ULR0 285 aaKnown RBP12.81□□□□□ -0.36
TOP3A-216ENST00000583804 KCNH4Q9UQ05 1017 aa12.81□□□□□ -0.36
TOP3A-216ENST00000583804 CCL15-CCL14A0A0B4J2E2 113 aa12.8□□□□□ -0.36
TOP3A-216ENST00000583804 A0A0G2JLL6 359 aaPredicted RBP12.8□□□□□ -0.36
TOP3A-216ENST00000583804 FAM155AB1AL88 458 aaPredicted RBP12.8□□□□□ -0.36
TOP3A-216ENST00000583804 NDUFB10O96000 172 aa12.8□□□□□ -0.36
TOP3A-216ENST00000583804 CETPP11597 493 aa12.8□□□□□ -0.36
TOP3A-216ENST00000583804 CCL15Q16663 113 aa12.8□□□□□ -0.36
TOP3A-216ENST00000583804 FASTKD5Q7L8L6 764 aaKnown RBP12.8□□□□□ -0.36
TOP3A-216ENST00000583804 PRRT2Q7Z6L0 340 aaPredicted RBP12.8□□□□□ -0.36
TOP3A-216ENST00000583804 NECAB1Q8N987 351 aa12.8□□□□□ -0.36
TOP3A-216ENST00000583804 NUP133Q8WUM0 1156 aa12.8□□□□□ -0.36
TOP3A-216ENST00000583804 SNX21Q969T3 373 aa12.8□□□□□ -0.36
TOP3A-216ENST00000583804 EMILIN3Q9NT22 766 aa12.8□□□□□ -0.36
TOP3A-216ENST00000583804 TPCN1Q9ULQ1 816 aa12.8□□□□□ -0.36
TOP3A-216ENST00000583804 SLC12A7Q9Y666 1083 aa12.8□□□□□ -0.36
TOP3A-216ENST00000583804 GREB1LQ9C091 1923 aaPredicted RBP12.8□□□□□ -0.36
TOP3A-216ENST00000583804 KLF18A0A0U1RQI7 1052 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 AOC2O75106 756 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 RXRAP19793 462 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 SLC1A4P43007 532 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 ANKRD1Q15327 319 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 CCDC96Q2M329 555 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 SH3D19Q5HYK7 790 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 KIAA1755Q5JYT7 1200 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 IFFO2Q5TF58 517 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 SGMS1Q86VZ5 419 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 ZNF654Q8IZM8 581 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 GMCL1P1Q8NEA9 526 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 MYL10Q9BUA6 226 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 BRPF3Q9ULD4 1205 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 SYNPO2Q9UMS6 1093 aa12.79□□□□□ -0.36
TOP3A-216ENST00000583804 MANSC4A6NHS7 340 aaPredicted RBP12.78□□□□□ -0.36
TOP3A-216ENST00000583804 PPFIA3O75145 1194 aa12.78□□□□□ -0.36
TOP3A-216ENST00000583804 HSP90AA1P07900 732 aaKnown RBP12.78□□□□□ -0.36
TOP3A-216ENST00000583804 KIF23Q02241 960 aaPredicted RBP12.78□□□□□ -0.36
TOP3A-216ENST00000583804 NOGQ13253 232 aa12.78□□□□□ -0.36
TOP3A-216ENST00000583804 CCDC83Q8IWF9 413 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms