RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 COBLO75128 1261 aa12.07□□□□□ -0.48
RFFL-208ENST00000581039 ERCC3P19447 782 aa12.07□□□□□ -0.48
RFFL-208ENST00000581039 GUCY1A2P33402 732 aa12.07□□□□□ -0.48
RFFL-208ENST00000581039 PLS1Q14651 629 aa12.07□□□□□ -0.48
RFFL-208ENST00000581039 PRAMEF19Q5SWL8 479 aa12.07□□□□□ -0.48
RFFL-208ENST00000581039 TMEM57Q8N5G2 664 aa12.07□□□□□ -0.48
RFFL-208ENST00000581039 FERMT2Q96AC1 680 aa12.07□□□□□ -0.48
RFFL-208ENST00000581039 EAF2Q96CJ1 260 aaPredicted RBP12.07□□□□□ -0.48
RFFL-208ENST00000581039 MROH8Q9H579 483 aa12.07□□□□□ -0.48
RFFL-208ENST00000581039 TLR7Q9NYK1 1049 aaKnown RBP12.07□□□□□ -0.48
RFFL-208ENST00000581039 NOP58Q9Y2X3 529 aaKnown RBP12.07□□□□□ -0.48
RFFL-208ENST00000581039 MAGEB6P1A0A0J9YX57 407 aa12.06□□□□□ -0.48
RFFL-208ENST00000581039 A0A1W2PRG0 241 aa12.06□□□□□ -0.48
RFFL-208ENST00000581039 SNX17Q15036 470 aa12.06□□□□□ -0.48
RFFL-208ENST00000581039 LRRC41Q15345 812 aa12.06□□□□□ -0.48
RFFL-208ENST00000581039 C1orf53Q5VUE5 145 aa12.06□□□□□ -0.48
RFFL-208ENST00000581039 SH3RF1Q7Z6J0 888 aa12.06□□□□□ -0.48
RFFL-208ENST00000581039 NCAPG2Q86XI2 1143 aa12.06□□□□□ -0.48
RFFL-208ENST00000581039 MB21D1Q8N884 522 aa12.06□□□□□ -0.48
RFFL-208ENST00000581039 MYLIPQ8WY64 445 aa12.06□□□□□ -0.48
RFFL-208ENST00000581039 ANTXR1Q9H6X2 564 aa12.06□□□□□ -0.48
RFFL-208ENST00000581039 PDLIM7Q9NR12 457 aa12.06□□□□□ -0.48
RFFL-208ENST00000581039 TACC3Q9Y6A5 838 aa12.06□□□□□ -0.48
RFFL-208ENST00000581039 DNAH12Q6ZR08 3092 aa12.06□□□□□ -0.48
RFFL-208ENST00000581039 MAST2Q6P0Q8 1798 aa12.05□□□□□ -0.48
RFFL-208ENST00000581039 TRIM43BA6NCK2 446 aa12.05□□□□□ -0.48
RFFL-208ENST00000581039 FCER1AP12319 257 aa12.05□□□□□ -0.48
RFFL-208ENST00000581039 FOSL2P15408 326 aa12.05□□□□□ -0.48
RFFL-208ENST00000581039 TLE2Q04725 743 aa12.05□□□□□ -0.48
RFFL-208ENST00000581039 ZKSCAN2Q63HK3 967 aa12.05□□□□□ -0.48
RFFL-208ENST00000581039 ABRAQ8N0Z2 381 aa12.05□□□□□ -0.48
RFFL-208ENST00000581039 SYMPKQ92797 1274 aaKnown RBP12.05□□□□□ -0.48
RFFL-208ENST00000581039 TRIM43Q96BQ3 446 aaPredicted RBP12.05□□□□□ -0.48
RFFL-208ENST00000581039 RIOK1Q9BRS2 568 aaKnown RBP12.05□□□□□ -0.48
RFFL-208ENST00000581039 CRNKL1Q9BZJ0 848 aaKnown RBP12.05□□□□□ -0.48
RFFL-208ENST00000581039 TTYH1Q9H313 450 aaPredicted RBP12.05□□□□□ -0.48
RFFL-208ENST00000581039 C1orf115Q9H7X2 142 aa12.05□□□□□ -0.48
RFFL-208ENST00000581039 MCM9Q9NXL9 1143 aa12.05□□□□□ -0.48
RFFL-208ENST00000581039 FOCADQ5VW36 1801 aa12.04□□□□□ -0.48
RFFL-208ENST00000581039 LAMA2P24043 3122 aaKnown RBP12.04□□□□□ -0.48
RFFL-208ENST00000581039 CDK5RAP2Q96SN8 1893 aa12.04□□□□□ -0.48
RFFL-208ENST00000581039 FLOT1O75955 427 aa12.04□□□□□ -0.48
RFFL-208ENST00000581039 RARBP10826 455 aa12.04□□□□□ -0.48
RFFL-208ENST00000581039 DSG3P32926 999 aa12.04□□□□□ -0.48
RFFL-208ENST00000581039 GABPAQ06546 454 aa12.04□□□□□ -0.48
RFFL-208ENST00000581039 TTF1Q15361 905 aaPredicted RBP12.04□□□□□ -0.48
RFFL-208ENST00000581039 RNF180Q86T96 592 aa12.04□□□□□ -0.48
RFFL-208ENST00000581039 MAML3Q96JK9 1138 aa12.04□□□□□ -0.48
RFFL-208ENST00000581039 RNPC3Q96LT9 517 aaKnown RBP12.04□□□□□ -0.48
RFFL-208ENST00000581039 XPNPEP3Q9NQH7 507 aa12.04□□□□□ -0.48
RFFL-208ENST00000581039 PRDM6Q9NQX0 595 aa12.04□□□□□ -0.48
RFFL-208ENST00000581039 PHF24Q9UPV7 400 aa12.04□□□□□ -0.48
RFFL-208ENST00000581039 SLC25A27O95847 323 aa12.03□□□□□ -0.48
RFFL-208ENST00000581039 CLTBP09497 229 aa12.03□□□□□ -0.48
RFFL-208ENST00000581039 RAG1P15918 1043 aa12.03□□□□□ -0.48
RFFL-208ENST00000581039 FAM47AQ5JRC9 791 aa12.03□□□□□ -0.48
RFFL-208ENST00000581039 SLC9C2Q5TAH2 1124 aa12.03□□□□□ -0.48
RFFL-208ENST00000581039 SAMD1Q6SPF0 538 aaPredicted RBP12.03□□□□□ -0.48
RFFL-208ENST00000581039 TMEM179Q6ZVK1 233 aa12.03□□□□□ -0.48
RFFL-208ENST00000581039 AACSQ86V21 672 aa12.03□□□□□ -0.48
RFFL-208ENST00000581039 SPICE1Q8N0Z3 855 aa12.03□□□□□ -0.48
RFFL-208ENST00000581039 SH2D4AQ9H788 454 aa12.03□□□□□ -0.48
RFFL-208ENST00000581039 ARHGEF10LQ9HCE6 1279 aa12.03□□□□□ -0.48
RFFL-208ENST00000581039 NRBP1Q9UHY1 535 aa12.03□□□□□ -0.48
RFFL-208ENST00000581039 VCANP13611 3396 aa12.03□□□□□ -0.48
RFFL-208ENST00000581039 MYH1P12882 1939 aa12.03□□□□□ -0.48
RFFL-208ENST00000581039 FRMPD3Q5JV73 1810 aa12.02□□□□□ -0.48
RFFL-208ENST00000581039 TMEM265A0A087WTH1 108 aa12.02□□□□□ -0.49
RFFL-208ENST00000581039 KIAA1755Q5JYT7 1200 aa12.02□□□□□ -0.49
RFFL-208ENST00000581039 ERC1Q8IUD2 1116 aa12.02□□□□□ -0.49
RFFL-208ENST00000581039 FTSJ3Q8IY81 847 aaKnown RBP12.02□□□□□ -0.49
RFFL-208ENST00000581039 ATG4CQ96DT6 458 aa12.02□□□□□ -0.49
RFFL-208ENST00000581039 MMP19Q99542 508 aa12.02□□□□□ -0.49
RFFL-208ENST00000581039 TMEM39AQ9NV64 488 aa12.02□□□□□ -0.49
RFFL-208ENST00000581039 SWAP70Q9UH65 585 aa12.02□□□□□ -0.49
RFFL-208ENST00000581039 TMX2Q9Y320 296 aa12.02□□□□□ -0.49
RFFL-208ENST00000581039 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.01□□□□□ -0.49
RFFL-208ENST00000581039 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.01□□□□□ -0.49
RFFL-208ENST00000581039 KIAA0355O15063 1070 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 PQBP1O60828 265 aaKnown RBP12.01□□□□□ -0.49
RFFL-208ENST00000581039 PGK1P00558 417 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 PDE6AP16499 860 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 ITGB8P26012 769 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 EVX2Q03828 476 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 ICA1Q05084 483 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 FPGSQ05932 587 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 KCTD2Q14681 263 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 TMEM132BQ14DG7 1078 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 SIAH1Q8IUQ4 282 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 ITPRIPQ8IWB1 547 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 SDR42E1Q8WUS8 393 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 TINF2Q9BSI4 451 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 VCPKMTQ9H867 229 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 DCP1AQ9NPI6 582 aaPredicted RBP12.01□□□□□ -0.49
RFFL-208ENST00000581039 DIS3Q9Y2L1 958 aaKnown RBP12.01□□□□□ -0.49
RFFL-208ENST00000581039 MYO5AQ9Y4I1 1855 aaKnown RBP12.01□□□□□ -0.49
RFFL-208ENST00000581039 RLFQ13129 1914 aa12.01□□□□□ -0.49
RFFL-208ENST00000581039 LTBP2Q14767 1821 aa12□□□□□ -0.49
RFFL-208ENST00000581039 A0A1W2PQ45 241 aaPredicted RBP12□□□□□ -0.49
RFFL-208ENST00000581039 A0A1W2PQY0 241 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms